pycom808g00040

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000808
N/A
Physical Location & Seq
Forward (+)
16114 .. 16881
768 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
ATGGATTTAATTGACTCATTATATTGGTTGTTGATTCATTTAGTTGTGTTTACTTCTTTTATTTATGCTTTTAATTCTTGCAAAACAAGTGATTACATAGGTCCAATTAGTCCCTGTGGATTCGACACCCTTGAAATATACATCAACAAAACCATTGATCGAAACTCTGTTTCTTTGGCATGTAAGCGCATGCACGTATTGGATAACGAGCAGAGACAATCTCTTCGTGTTGGTTGTGGATTAGACCCTGCAAATGAAGCTTTGACATCTGTCTGCAGTAGGTTTGCTAACTTGACAAAGGTAGAGATAACTTATGCCGGTTGGATGTCCAAACTAGGAAAGCAGTTGGATCACCAAGGGCTTCTCATTCTTTCCAACTACTGTCCTTCTATGGTCGATCTCACACTAAGCTACTGCATGTTCATCACGGATGTGGGCATTCATCACTTGTCTTCTTGCTCAAAATTTTCAGCCTTGAACTGTTGTTGTGGGCTGCAAGCAGGGTTATCTCTAAGATTTCGGAGGTCCTGTGTGAAATTTATAAAAAGGCCCTTTTTAAGATGGTTTTATTTTAATTTTATTTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

197

Amino Acids

22.37

Weight (kDa)

8.6

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 2 cut(s) 464, 536
AgsI TTSAA 2 cut(s) 134, 478
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 2 cut(s) 260, 411
AluI AGCT 2 cut(s) 260, 411
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 357
AoxI GGCC 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 464, 536
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 3 cut(s) 101, 525, 549
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 2 cut(s) 101, 525
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 480
BccI CCATC 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 274
BisI GCNGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 101, 525
BmgT120I GGNCC 3 cut(s) 101, 525, 549
BoxI GACNNNNGTC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bse118I RCCGGY 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 330, 436
BseXI GCAGC 1 cut(s) 480
BshFI GGCC 1 cut(s) 550
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 1 cut(s) 550
Bsp143I GATC 3 cut(s) 157, 349, 397
BspANI GGCC 1 cut(s) 550
BspMAI CTGCAG 1 cut(s) 278
BspPI GGATC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 157, 349, 397
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 383, 482
Bst6I CTCTTC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 191, 498
BstDEI CTNAG 2 cut(s) 407, 512
BstF5I GGATG 2 cut(s) 330, 436
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 160, 352, 400
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 157, 349, 397
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNSI RCATGY 3 cut(s) 183, 193, 421
BstPAI GACNNNNGTC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 550
BtsCI GGATG 2 cut(s) 330, 436
Cac8I GCNNGC 2 cut(s) 191, 498
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 101, 525, 549
CviAII CATG 3 cut(s) 180, 190, 418
CviJI RGCY 6 cut(s) 260, 361, 411, 473, 493, 550
CviKI_1 RGCY 6 cut(s) 260, 361, 411, 473, 493, 550
DdeI CTNAG 2 cut(s) 407, 512
DpnI GATC 3 cut(s) 159, 351, 399
DpnII GATC 3 cut(s) 157, 349, 397
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 101, 525
EcoO109I RGGNCCY 2 cut(s) 525, 549
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 3 cut(s) 183, 193, 421
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 179, 189, 417
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 2 cut(s) 337, 443
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 494
HaeIII GGCC 1 cut(s) 550
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 183, 193, 421
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 3 cut(s) 14, 34, 120
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 522
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 383, 482
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 6 cut(s) 81, 193, 251, 276, 417, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 2 cut(s) 407, 512
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 3 cut(s) 183, 193, 421
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 157, 349, 397
LpnPI CCDG 5 cut(s) 127, 261, 331, 486, 541
Lsp1109I GCAGC 1 cut(s) 480
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 195
MalI GATC 3 cut(s) 159, 351, 399
MboI GATC 3 cut(s) 157, 349, 397
MboII GAAGA 2 cut(s) 215, 444
MluCI AATT 7 cut(s) 9, 73, 105, 464, 536, 574, 586
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 3 cut(s) 302, 327, 399
MnlI CCTC 1 cut(s) 516
MseI TTAA 6 cut(s) 8, 72, 557, 573, 585, 589
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 3 cut(s) 157, 349, 397
NlaIII CATG 3 cut(s) 183, 193, 421
NspI RCATGY 3 cut(s) 183, 193, 421
OliI CACNNNNGTG 1 cut(s) 431
PacI TTAATTAA 1 cut(s) 589
PaeI GCATGC 1 cut(s) 193
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 34, 120
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 269
PsiI TTATAA 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 525
PspPI GGNCC 3 cut(s) 101, 525, 549
PspPPI RGGWCCY 1 cut(s) 525
PstI CTGCAG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 6 cut(s) 8, 72, 557, 573, 585, 589
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 3 cut(s) 157, 349, 397
Sau96I GGNCC 3 cut(s) 101, 525, 549
SchI GAGTC 1 cut(s) 8
SetI ASST 7 cut(s) 103, 198, 262, 284, 303, 413, 527
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 2 cut(s) 101, 525
SmiMI CAYNNNNRTG 1 cut(s) 431
SphI GCATGC 1 cut(s) 193
Sse9I AATT 7 cut(s) 9, 73, 105, 464, 536, 574, 586
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 383, 482
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 123, 160, 396
TasI AATT 7 cut(s) 9, 73, 105, 464, 536, 574, 586
TfiI GAWTC 2 cut(s) 34, 120
Tru1I TTAA 6 cut(s) 8, 72, 557, 573, 585, 589
Tru9I TTAA 6 cut(s) 8, 72, 557, 573, 585, 589
TseI GCWGC 1 cut(s) 493
TspDTI ATGAA 4 cut(s) 26, 270, 412, 431
TspGWI ACGGA 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 101, 525
XapI RAATTY 2 cut(s) 464, 536
XceI RCATGY 3 cut(s) 183, 193, 421
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.