RCHIOBHM_MTG0498411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
N/A
Physical Location & Seq
Reverse (-)
74833 .. 76902
2070 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGGTGACTCCGCCATGGGAAGAGCCGCTTCTTTCTTGCTTGATAGTGGGGGCTTCCATTCACCAACGCAGACTAAAAGTGCTCCCCGAACCGTGCTGGATAGTCACCCATCACACGGCTCTCAAACCCAACCTGTGGTGGATCCCGGGGGACAAAGCCAAAGCGCTTGATCCTTTGCCCCATACTTTGAGATGCTCCTCCCCGCGCACCGACGCTGCTCGTGATAGGCTTCGCTTTAAGCCGCTATCGTTCGGTTCGAATAAGTCAAGTCCTTTCGGTCGGTTCGCTCAGGTGGTCTTCCCTTATCTTCCCTTACGTTCAGAGTTGTTATGGTTTTTTAAAGGAGCACCGGCCGAGCGCCCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.94

Weight (kDa)

10.11

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AccII CGCG 1 cut(s) 205
AciI CCGC 4 cut(s) 11, 26, 203, 242
AclWI GGATC 3 cut(s) 136, 149, 164
AcoI YGGCCR 1 cut(s) 351
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 115, 135
Alw21I GWGCWC 2 cut(s) 84, 349
AlwI GGATC 3 cut(s) 136, 149, 164
Ama87I CYCGRG 1 cut(s) 145
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 3 cut(s) 166, 207, 360
AsuC2I CCSGG 2 cut(s) 146, 147
AsuHPI GGTGA 3 cut(s) 16, 53, 97
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 145
BamHI GGATCC 1 cut(s) 141
BauI CACGAG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 84, 349
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 132
BcnI CCSGG 2 cut(s) 146, 147
BfoI RGCGCY 2 cut(s) 167, 361
BisI GCNGC 3 cut(s) 26, 216, 242
BlsI GCNGC 3 cut(s) 27, 217, 243
Bme1390I CCNGG 2 cut(s) 146, 147
BmeT110I CYCGRG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 146, 147
BmsI GCATC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 257
BpuMI CCSGG 2 cut(s) 146, 147
BsaJI CCNNGG 3 cut(s) 14, 145, 146
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 135
Bse118I RCCGGY 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 14, 145, 146
BseLI CCNNNNNNNGG 2 cut(s) 115, 135
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 187
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 2 cut(s) 280, 354
BshFI GGCC 1 cut(s) 353
BsiEI CGRYCG 2 cut(s) 280, 354
BsiHKAI GWGCWC 2 cut(s) 84, 349
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 146, 350
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 115, 135
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 145
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 84, 349
Bsp143I GATC 2 cut(s) 141, 169
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 4 cut(s) 11, 26, 203, 242
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 3 cut(s) 136, 149, 164
BspQI GCTCTTC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 14, 145, 146
BssMI GATC 2 cut(s) 141, 169
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 2 cut(s) 167, 361
BstHHI GCGC 3 cut(s) 166, 207, 360
BstKTI GATC 2 cut(s) 144, 172
BstMBI GATC 2 cut(s) 141, 169
BstMCI CGRYCG 2 cut(s) 280, 354
BstSCI CCNGG 2 cut(s) 144, 145
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BstZI CGGCCG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 14
CfoI GCGC 3 cut(s) 166, 207, 360
Cfr10I RCCGGY 1 cut(s) 349
Cfr9I CCCGGG 1 cut(s) 145
CseI GACGC 1 cut(s) 221
CviAII CATG 1 cut(s) 15
CviJI RGCY 7 cut(s) 25, 53, 119, 158, 229, 241, 353
CviKI_1 RGCY 7 cut(s) 25, 53, 119, 158, 229, 241, 353
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 143, 171
DpnII GATC 2 cut(s) 141, 169
DraI TTTAAA 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 351
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 18
FaiI YATR 3 cut(s) 16, 183, 331
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 14
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 26, 216, 242
Fsp4HI GCNGC 3 cut(s) 26, 216, 242
GlaI GCGC 3 cut(s) 165, 206, 359
GluI GCNGC 3 cut(s) 26, 216, 242
HaeII RGCGCY 2 cut(s) 167, 361
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 146, 350
HgaI GACGC 1 cut(s) 221
HhaI GCGC 3 cut(s) 166, 207, 360
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 3 cut(s) 164, 205, 358
HinP1I GCGC 3 cut(s) 164, 205, 358
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 146, 350
HphI GGTGA 3 cut(s) 16, 53, 97
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 3 cut(s) 164, 205, 358
Kzo9I GATC 2 cut(s) 141, 169
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 87, 200, 344
LpnPI CCDG 5 cut(s) 82, 146, 159, 275, 363
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 182
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 4, 103
MalI GATC 2 cut(s) 143, 171
MboI GATC 2 cut(s) 141, 169
MboII GAAGA 3 cut(s) 32, 289, 299
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 84, 349
MnlI CCTC 1 cut(s) 208
MseI TTAA 2 cut(s) 237, 339
MspI CCGG 2 cut(s) 146, 350
MspR9I CCNGG 2 cut(s) 146, 147
MvnI CGCG 1 cut(s) 205
NciI CCSGG 2 cut(s) 146, 147
NcoI CCATGG 1 cut(s) 14
NdeII GATC 2 cut(s) 141, 169
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 4, 103
NspV TTCGAA 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 3 cut(s) 27, 217, 243
PspN4I GGNNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 237, 339
SatI GCNGC 3 cut(s) 26, 216, 242
Sau3AI GATC 2 cut(s) 141, 169
ScrFI CCNGG 2 cut(s) 146, 147
SduI GDGCHC 2 cut(s) 84, 349
SetI ASST 3 cut(s) 135, 294, 319
SfaNI GCATC 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 257
SmaI CCCGGG 1 cut(s) 147
SsiI CCGC 4 cut(s) 11, 26, 203, 242
StyD4I CCNGG 2 cut(s) 144, 145
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 257
TaqII GACCGA 1 cut(s) 266
TauI GCSGC 2 cut(s) 28, 244
Tru1I TTAA 2 cut(s) 237, 339
Tru9I TTAA 2 cut(s) 237, 339
TseFI GTSAC 2 cut(s) 4, 103
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 4, 103
TspMI CCCGGG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 135
XmaI CCCGGG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.