RCHIOBHM_MTG0498621

Ribonuclease H

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
N/A
Physical Location & Seq
Forward (+)
134857 .. 135373
517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGATGAGTTAGTGGCTGATTATCTCATTGAGGGTCAATGGAATCTTAATAAGCTTAGAGAGGTTGGGAGTACTGATGTGCTATCTCTGATCATGAATACTCCTACAGGTTTTGGAAATGAAATGCAGGATACTTTTCTTTTTTGCCCTTCTCCTAATGGCCTTTTTTCTGTCAAGTCTGCCTTCAATTTGTGCATTGATTCTGGTTCCCTATCTTTTTATCAATGGAGTTTCATTTTGAAGTTAAGAATCCCTCTCTCTACGGTCGAGCTATTTCATCCCTTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.84

Weight (kDa)

4.45

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 187, 241
AluBI AGCT 2 cut(s) 55, 271
AluI AGCT 2 cut(s) 55, 271
AoxI GGCC 1 cut(s) 160
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 208
BseGI GGATG 2 cut(s) 10, 277
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 267
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 90
BspANI GGCC 1 cut(s) 162
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 208
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 10, 277
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 10, 277
CciI TCATGA 1 cut(s) 93
Csp6I GTAC 1 cut(s) 72
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 17, 55, 162, 271
CviKI_1 RGCY 4 cut(s) 17, 55, 162, 271
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 90
FokI GGATG 2 cut(s) 17, 264
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 3 cut(s) 43, 200, 249
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 159, 193
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 127, 195
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 93, 113, 189
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 25, 55, 264
MseI TTAA 2 cut(s) 48, 245
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 208
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 3 cut(s) 43, 200, 249
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 48, 245
Sau3AI GATC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 73
SetI ASST 4 cut(s) 57, 66, 112, 273
SfcI CTRYAG 1 cut(s) 105
SgeI CNNG 6 cut(s) 106, 120, 140, 187, 216, 280
Sse9I AATT 1 cut(s) 187
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 3 cut(s) 43, 200, 249
Tru1I TTAA 2 cut(s) 48, 245
Tru9I TTAA 2 cut(s) 48, 245
TspDTI ATGAA 4 cut(s) 110, 135, 223, 266
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.