RCHIOBHM_MTG0498641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
N/A
Physical Location & Seq
Forward (+)
135498 .. 136885
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGCAATTGAACCCATTTTTTGGTTTAAGGGCTGCTCGCCCTACCGAAACTCCTTCCCCTTTCCCAACTACGAATAAGATCGAGAGGAGCCCGAGAGCCCCAAAACCAAGAAGGGAAACGGGAGCCTTTCGATTCACTCCCCATTCTCTCTTAAATAAAGCTCGCCCTCGGGCCCTGGGCAGGTCGCCGGGTCTTTCCCTGTTGTTCTGTTACCGCCACAGACGCACAGAAGAGGTATGCCCAGCGCGCGGAGGATCCGTTGAGAGGTGTGCTCCCCTTTCGTCGAGTGCCCCGCCCGGTTCACTGGGCTGTTGGCCTACCAAGCACTTGCCCGCTGCTCCTGCCGCCCGGCGGAGCGCTCGTTCTCCTTACTGTTCTCTCCGCTGGGGCCCCCCTCCCATTGCTCTAGCCATAAGCTATGGCAGCTCCAGCTCGCAACCACGGGGGCCCGCCCCGCGAGGCCGGGGTGGGCTCAGCGGTCAGGTTAGCCCTCATTCGAATGGGTCTTTCACTTTTGACAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTATGTTACTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.97

Weight (kDa)

11.44

Isoelectric Point (pI)

81.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 20
AccII CGCG 4 cut(s) 247, 249, 457, 567
AclWI GGATC 2 cut(s) 249, 262
AcoI YGGCCR 1 cut(s) 568
AfaI GTAC 1 cut(s) 587
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 5 cut(s) 20, 180, 248, 264, 351
AgeI ACCGGT 1 cut(s) 582
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 346, 378
AluBI AGCT 4 cut(s) 161, 417, 426, 432
AluI AGCT 4 cut(s) 161, 417, 426, 432
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 2 cut(s) 249, 262
Ama87I CYCGRG 2 cut(s) 91, 168
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 6 cut(s) 171, 314, 388, 446, 460, 568
ApaI GGGCCC 3 cut(s) 175, 392, 450
ApeKI GCWGC 3 cut(s) 32, 335, 423
AsiGI ACCGGT 1 cut(s) 582
AspLEI GCGC 3 cut(s) 247, 249, 359
AspS9I GGNCC 6 cut(s) 171, 172, 388, 389, 446, 447
AsuC2I CCSGG 4 cut(s) 189, 297, 349, 464
AsuHPI GGTGA 1 cut(s) 572
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 2 cut(s) 91, 168
BaeGI GKGCMC 4 cut(s) 175, 292, 392, 450
BamHI GGATCC 1 cut(s) 254
BanII GRGCYC 6 cut(s) 92, 100, 175, 392, 450, 474
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 19, 322, 435
BccI CCATC 2 cut(s) 567, 579
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 4 cut(s) 189, 297, 349, 464
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 2 cut(s) 407, 525
BfoI RGCGCY 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 171
BglII AGATCT 1 cut(s) 521
BisI GCNGC 6 cut(s) 33, 336, 345, 424, 565, 568
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 6 cut(s) 34, 337, 346, 425, 566, 569
Bme1390I CCNGG 5 cut(s) 176, 189, 297, 349, 464
BmeT110I CYCGRG 2 cut(s) 91, 168
BmgT120I GGNCC 6 cut(s) 171, 172, 388, 389, 446, 447
BmiI GGNNCC 9 cut(s) 89, 124, 173, 256, 389, 390, 391, 447, 448
BmrFI CCNGG 5 cut(s) 176, 189, 297, 349, 464
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BpmI CTGGAG 1 cut(s) 412
Bpu1102I GCTNAGC 1 cut(s) 473
Bpu14I TTCGAA 1 cut(s) 497
BpuMI CCSGG 4 cut(s) 189, 297, 349, 464
BsaJI CCNNGG 6 cut(s) 167, 174, 175, 440, 463, 565
BsaWI WCCGGW 1 cut(s) 582
BsaXI ACNNNNNCTCC 8 cut(s) 34, 64, 243, 273, 346, 376, 528, 558
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 180, 248, 264, 351
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 6 cut(s) 167, 174, 175, 440, 463, 565
BseLI CCNNNNNNNGG 5 cut(s) 20, 180, 248, 264, 351
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 487
BseNI ACTGG 1 cut(s) 309
BsePI GCGCGC 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 4 cut(s) 175, 292, 392, 450
BseXI GCAGC 3 cut(s) 19, 322, 435
BseYI CCCAGC 2 cut(s) 241, 384
Bsh1236I CGCG 4 cut(s) 247, 249, 457, 567
BshFI GGCC 6 cut(s) 173, 316, 390, 448, 462, 570
BshTI ACCGGT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 91, 168
BsiSI CCGG 5 cut(s) 188, 297, 349, 463, 583
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 5 cut(s) 20, 180, 248, 264, 351
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 6 cut(s) 173, 316, 390, 448, 462, 570
BsoBI CYCGRG 2 cut(s) 91, 168
Bsp119I TTCGAA 1 cut(s) 497
Bsp120I GGGCCC 3 cut(s) 171, 388, 446
Bsp1286I GDGCHC 8 cut(s) 92, 100, 175, 274, 292, 392, 450, 474
Bsp143I GATC 3 cut(s) 78, 254, 521
Bsp1720I GCTNAGC 1 cut(s) 473
BspANI GGCC 6 cut(s) 173, 316, 390, 448, 462, 570
BspCNI CTCAG 1 cut(s) 486
BspFNI CGCG 4 cut(s) 247, 249, 457, 567
BspLI GGNNCC 9 cut(s) 89, 124, 173, 256, 389, 390, 391, 447, 448
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 249, 262
BspT104I TTCGAA 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 6 cut(s) 167, 174, 175, 440, 463, 565
BssHII GCGCGC 1 cut(s) 245
BssMI GATC 3 cut(s) 78, 254, 521
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 374, 617
Bst6I CTCTTC 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 6 cut(s) 37, 163, 247, 333, 434, 450
BstDEI CTNAG 1 cut(s) 473
BstDSI CCRYGG 2 cut(s) 440, 565
BstFNI CGCG 4 cut(s) 247, 249, 457, 567
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 3 cut(s) 247, 249, 359
BstKTI GATC 3 cut(s) 81, 257, 524
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 3 cut(s) 78, 254, 521
BstMWI GCNNNNNNNGC 8 cut(s) 222, 246, 322, 341, 344, 423, 429, 454
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 5 cut(s) 174, 187, 295, 347, 462
BstSLI GKGCMC 4 cut(s) 175, 292, 392, 450
BstUI CGCG 4 cut(s) 247, 249, 457, 567
BstV1I GCAGC 3 cut(s) 19, 322, 435
BstX2I RGATCY 2 cut(s) 254, 521
BstYI RGATCY 2 cut(s) 254, 521
BsuRI GGCC 6 cut(s) 173, 316, 390, 448, 462, 570
BtgI CCRYGG 2 cut(s) 440, 565
BtgZI GCGATG 1 cut(s) 545
BtsIMutI CAGTG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 6 cut(s) 37, 163, 247, 333, 434, 450
CfoI GCGC 3 cut(s) 247, 249, 359
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 6 cut(s) 171, 172, 388, 389, 446, 447
Cfr42I CCGCGG 1 cut(s) 568
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 586
CspAI ACCGGT 1 cut(s) 582
CviAII CATG 1 cut(s) 603
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 1 cut(s) 473
DpnI GATC 3 cut(s) 80, 256, 523
DpnII GATC 3 cut(s) 78, 254, 521
EaeI YGGCCR 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 367
Eco24I GRGCYC 6 cut(s) 92, 100, 175, 392, 450, 474
Eco47III AGCGCT 1 cut(s) 358
Eco88I CYCGRG 2 cut(s) 91, 168
EcoO109I RGGNCCY 4 cut(s) 172, 388, 389, 446
EcoRII CCWGG 1 cut(s) 174
EcoT38I GRGCYC 6 cut(s) 92, 100, 175, 392, 450, 474
FaeI CATG 1 cut(s) 606
FaiI YATR 5 cut(s) 238, 413, 420, 604, 610
FaqI GGGAC 1 cut(s) 534
FatI CATG 1 cut(s) 602
FauI CCCGC 4 cut(s) 300, 340, 457, 462
Fnu4HI GCNGC 6 cut(s) 33, 336, 345, 424, 565, 568
FriOI GRGCYC 6 cut(s) 92, 100, 175, 392, 450, 474
Fsp4HI GCNGC 6 cut(s) 33, 336, 345, 424, 565, 568
FspBI CTAG 2 cut(s) 407, 525
GlaI GCGC 3 cut(s) 246, 248, 358
GluI GCNGC 6 cut(s) 33, 336, 345, 424, 565, 568
GsaI CCCAGC 2 cut(s) 245, 388
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 6 cut(s) 173, 316, 390, 448, 462, 570
HapII CCGG 5 cut(s) 188, 297, 349, 463, 583
HgaI GACGC 1 cut(s) 231
HhaI GCGC 3 cut(s) 247, 249, 359
Hin1II CATG 1 cut(s) 606
Hin6I GCGC 3 cut(s) 245, 247, 357
HinP1I GCGC 3 cut(s) 245, 247, 357
HinfI GANTC 3 cut(s) 132, 540, 555
HpaII CCGG 5 cut(s) 188, 297, 349, 463, 583
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 302, 580
Hpy188III TCNNGA 2 cut(s) 82, 525
Hpy8I GTNNAC 2 cut(s) 302, 580
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 63, 105
HpyCH4III ACNGT 2 cut(s) 374, 617
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 8 cut(s) 222, 246, 322, 341, 344, 423, 429, 454
HpyF3I CTNAG 1 cut(s) 473
Hsp92II CATG 1 cut(s) 606
HspAI GCGC 3 cut(s) 245, 247, 357
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 3 cut(s) 78, 254, 521
LmnI GCTCC 6 cut(s) 87, 122, 277, 343, 354, 431
Lsp1109I GCAGC 3 cut(s) 19, 322, 435
MaeI CTAG 2 cut(s) 407, 525
MaeIII GTNAC 2 cut(s) 209, 611
MalI GATC 3 cut(s) 80, 256, 523
MboI GATC 3 cut(s) 78, 254, 521
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 2 cut(s) 254, 521
MhlI GDGCHC 8 cut(s) 92, 100, 175, 274, 292, 392, 450, 474
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 549
MnlI CCTC 9 cut(s) 78, 177, 226, 245, 258, 405, 452, 501, 554
MseI TTAA 2 cut(s) 26, 152
MslI CAYNNNNRTG 2 cut(s) 498, 607
MspA1I CMGCKG 4 cut(s) 335, 384, 477, 567
MspI CCGG 5 cut(s) 188, 297, 349, 463, 583
MspR9I CCNGG 5 cut(s) 176, 189, 297, 349, 464
MunI CAATTG 1 cut(s) 5
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 4 cut(s) 247, 249, 457, 567
MwoI GCNNNNNNNGC 8 cut(s) 222, 246, 322, 341, 344, 423, 429, 454
NciI CCSGG 4 cut(s) 189, 297, 349, 464
NdeII GATC 3 cut(s) 78, 254, 521
NlaIII CATG 1 cut(s) 606
NlaIV GGNNCC 9 cut(s) 89, 124, 173, 256, 389, 390, 391, 447, 448
NspV TTCGAA 1 cut(s) 497
PasI CCCWGGG 1 cut(s) 175
PauI GCGCGC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PfeI GAWTC 2 cut(s) 132, 555
PflMI CCANNNNNTGG 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 582
PkrI GCNGC 6 cut(s) 34, 337, 346, 425, 566, 569
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 241, 384
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 9 cut(s) 89, 124, 173, 256, 389, 390, 391, 447, 448
PspOMI GGGCCC 3 cut(s) 171, 388, 446
PspPI GGNCC 6 cut(s) 171, 172, 388, 389, 446, 447
PsuI RGATCY 2 cut(s) 254, 521
PteI GCGCGC 1 cut(s) 245
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 498, 607
SacII CCGCGG 1 cut(s) 568
SaqAI TTAA 2 cut(s) 26, 152
SatI GCNGC 6 cut(s) 33, 336, 345, 424, 565, 568
Sau3AI GATC 3 cut(s) 78, 254, 521
Sau96I GGNCC 6 cut(s) 171, 172, 388, 389, 446, 447
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 5 cut(s) 176, 189, 297, 349, 464
SduI GDGCHC 8 cut(s) 92, 100, 175, 274, 292, 392, 450, 474
SetI ASST 8 cut(s) 163, 185, 237, 269, 419, 428, 434, 486
Sfr303I CCGCGG 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 497
SgrBI CCGCGG 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 498, 607
Sse9I AATT 1 cut(s) 5
SspMI CTAG 2 cut(s) 407, 525
StyD4I CCNGG 5 cut(s) 174, 187, 295, 347, 462
TaaI ACNGT 2 cut(s) 374, 617
TaqI TCGA 4 cut(s) 81, 130, 284, 497
TasI AATT 1 cut(s) 5
TauI GCSGC 3 cut(s) 347, 567, 570
TfiI GAWTC 2 cut(s) 132, 555
Tru1I TTAA 2 cut(s) 26, 152
Tru9I TTAA 2 cut(s) 26, 152
TscAI CASTG 1 cut(s) 309
TseI GCWGC 3 cut(s) 32, 335, 423
TspGWI ACGGA 2 cut(s) 247, 536
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 524
XspI CTAG 2 cut(s) 407, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.