RCHIOBHM_CPG0502801

NAD(P)H-quinone oxidoreductase chain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
N/A
Physical Location & Seq
Forward (+)
151149 .. 151744
596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGCTTTTAGCCGGAATCTTATTAAAAATGGGAGCGTATGGGTTGGTTCGGATCAATATGGAATTATTACCCCATGCCCATTCTATATTTTCTCCCTGGTTGATGATAGTGGGCACAATTCAAATTATCTATGCAGCTTTAACATCTCCTGGTCAGCGTAATTTAAAAAAAAGAATAGCCTATTCCTCTGTATCTCATATGGGTTTCATAATTATAGGAATTGGTTCTATAAGCGATACAGGGCTCAATGGGGCCATTTTACAAATAATTTCTCACGGATTTATTGGCGCTGCGCTTTTTTCTTGGCCGGAACGAGTTATGATAGAATACGACTTATTTATCTCGACGAAATGGGCGGAATGGCTATCGCAATTCCAAAAATATTCACGACTTTCAGTATCTTATCAATGGCTTCGCTTGCATTACCGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

9.85

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 1 - 102 1.1e-23 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 305
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 2 cut(s) 95, 148
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 252, 305
ApeKI GCWGC 2 cut(s) 134, 290
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 2 cut(s) 290, 295
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 146, 277
BciT130I CCWGG 2 cut(s) 97, 150
BcnI CCSGG 1 cut(s) 428
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 2 cut(s) 135, 291
BlsI GCNGC 2 cut(s) 136, 292
Bme1390I CCNGG 3 cut(s) 97, 150, 428
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 97, 150, 428
BpuMI CCSGG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 97, 150
BseDI CCNNGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 146, 277
BshFI GGCC 2 cut(s) 254, 307
BsiSI CCGG 3 cut(s) 12, 308, 427
BsnI GGCC 2 cut(s) 254, 307
Bsp1286I GDGCHC 2 cut(s) 116, 246
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 254, 307
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 97, 150
BstC8I GCNNGC 1 cut(s) 419
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 295
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstNI CCWGG 2 cut(s) 97, 150
BstSCI CCNGG 3 cut(s) 95, 148, 426
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 146, 277
BsuRI GGCC 2 cut(s) 254, 307
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 2 cut(s) 290, 295
Cfr13I GGNCC 1 cut(s) 252
CviAII CATG 2 cut(s) 74, 432
CviJI RGCY 8 cut(s) 11, 137, 179, 244, 254, 307, 364, 412
CviKI_1 RGCY 8 cut(s) 11, 137, 179, 244, 254, 307, 364, 412
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraI TTTAAA 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 305
EciI GGCGGA 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 95, 148
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 2 cut(s) 77, 435
FatI CATG 2 cut(s) 73, 431
FauNDI CATATG 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 135, 291
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 135, 291
GlaI GCGC 2 cut(s) 289, 294
GluI GCNGC 2 cut(s) 135, 291
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 2 cut(s) 254, 307
HapII CCGG 3 cut(s) 12, 308, 427
HhaI GCGC 2 cut(s) 290, 295
Hin1II CATG 2 cut(s) 77, 435
Hin6I GCGC 2 cut(s) 288, 293
HinP1I GCGC 2 cut(s) 288, 293
HinfI GANTC 1 cut(s) 15
HpaII CCGG 3 cut(s) 12, 308, 427
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 343, 387
Hpy99I CGWCG 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 134, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
Hsp92II CATG 2 cut(s) 77, 435
HspAI GCGC 2 cut(s) 288, 293
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 7 cut(s) 25, 82, 109, 135, 162, 225, 321
Lsp1109I GCAGC 2 cut(s) 146, 277
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 116, 246
MluCI AATT 8 cut(s) 62, 117, 123, 160, 210, 219, 267, 371
MnlI CCTC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 223
MseI TTAA 3 cut(s) 23, 140, 164
MspI CCGG 3 cut(s) 12, 308, 427
MspR9I CCNGG 3 cut(s) 97, 150, 428
MteI GCGCNGCGC 1 cut(s) 291
MvaI CCWGG 2 cut(s) 97, 150
MwoI GCNNNNNNNGC 1 cut(s) 418
NciI CCSGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 198
NdeII GATC 1 cut(s) 51
NlaIII CATG 2 cut(s) 77, 435
NlaIV GGNNCC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 136, 292
Psp6I CCWGG 2 cut(s) 95, 148
PspGI CCWGG 2 cut(s) 95, 148
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 23, 140, 164
SatI GCNGC 2 cut(s) 135, 291
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 252
ScrFI CCNGG 3 cut(s) 97, 150, 428
SduI GDGCHC 2 cut(s) 116, 246
SetI ASST 1 cut(s) 139
Sse9I AATT 8 cut(s) 62, 117, 123, 160, 210, 219, 267, 371
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 383
StyD4I CCNGG 3 cut(s) 95, 148, 426
TaqI TCGA 1 cut(s) 344
TasI AATT 8 cut(s) 62, 117, 123, 160, 210, 219, 267, 371
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 3 cut(s) 23, 140, 164
Tru9I TTAA 3 cut(s) 23, 140, 164
TseI GCWGC 2 cut(s) 134, 290
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.