RchiOBHm_Chr7g0176811

Oxysterol-binding protein-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
7375 .. 8127
753 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGCAAGTGAAGAAGATGCACCCACTATGCTATATAACGATCGAGAACGGTGTTATAGGCCACCAGTCACCAGAGGCATCGTCGCTGTTGAGGACTCGGAGCTTGCCGGTGAGTCTGGCGATGGCTTCGCTGGGTACGGTTTGCCTTGAGAAAGCTCTCATCCTCTGCGACGTGTACCACTGTAACACAGAGTTACCAATCTTCTGGGAATTAAAGTATCAAACTTTTGCCCCTTTTTCATGGCGGAAGAGGAAGAAGAAGAGGAGAGGACGAGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.81

Weight (kDa)

9.83

Isoelectric Point (pI)

71.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AfaI GTAC 2 cut(s) 136, 176
AflIII ACRYGT 1 cut(s) 171
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 2 cut(s) 102, 155
AluI AGCT 2 cut(s) 102, 155
AoxI GGCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 60, 121
BccI CCATC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 172
BmsI GCATC 2 cut(s) 6, 86
BpuEI CTTGAG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 50, 139, 182
Bst6I CTCTTC 2 cut(s) 242, 254
BstC8I GCNNGC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 134
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 106
Csp6I GTAC 2 cut(s) 135, 175
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 60, 102, 125, 155
CviKI_1 RGCY 4 cut(s) 60, 102, 125, 155
CviQI GTAC 2 cut(s) 135, 175
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 242, 254
EarI CTCTTC 2 cut(s) 242, 254
EciI GGCGGA 1 cut(s) 259
FaeI CATG 1 cut(s) 243
FaiI YATR 5 cut(s) 28, 33, 35, 56, 241
FatI CATG 1 cut(s) 239
FokI GGATG 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 243
HinfI GANTC 2 cut(s) 94, 112
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 60, 121
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 2 cut(s) 85, 173
HpyCH4III ACNGT 3 cut(s) 50, 139, 182
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 4, 19
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 243
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 77, 84, 101, 116, 120, 190
LweI GCATC 2 cut(s) 6, 86
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 66, 182, 192
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 7 cut(s) 22, 25, 193, 259, 265, 268, 271
MluCI AATT 1 cut(s) 209
MlyI GAGTC 2 cut(s) 88, 121
MnlI CCTC 7 cut(s) 67, 84, 173, 243, 255, 260, 270
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 107
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 66
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 2 cut(s) 88, 120
PpsI GAGTC 2 cut(s) 88, 120
PspFI CCCAGC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 2 cut(s) 136, 176
RsaNI GTAC 2 cut(s) 135, 175
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 88, 121
SetI ASST 4 cut(s) 104, 157, 174, 281
SfaNI GCATC 2 cut(s) 6, 86
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 209
SsiI CCGC 1 cut(s) 244
TaaI ACNGT 3 cut(s) 50, 139, 182
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 209
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.