RchiOBHm_Chr7g0178191

Glucan endo-1,3-beta-glucosidase, basic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
924109 .. 924348
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGAAAAGATTCACAATGCAATCTCAAAGGCTGATCTTGCAAACAAAATTAAAGTCTCCACTGCCGTTCAACCTGTAATTCTCCAGGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTATCGACCATTTCTTGATCCTATCATTGGTTTCCTAGTGGGAAACAAATCTCCATTGCTTCTAAATATGTACCCATACTTTAGTTTCATTCACAACTTACCGAGCAAACATTGA

Protein Analysis

79

Amino Acids

8.97

Weight (kDa)

9.57

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 74 2.6e-21 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 118, 137
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 107, 152
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 118, 137
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 1 cut(s) 9
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 152
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 107, 152
BseMI GCAATG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 107, 152
BsmAI GTCTC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 34, 110, 142
BspPI GGATC 2 cut(s) 118, 137
BsrDI GCAATG 1 cut(s) 179
BssMI GATC 3 cut(s) 34, 110, 142
Bst2UI CCWGG 1 cut(s) 86
BstKTI GATC 3 cut(s) 37, 113, 145
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 34, 110, 142
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
CviQI GTAC 1 cut(s) 196
DpnI GATC 3 cut(s) 36, 112, 144
DpnII GATC 3 cut(s) 34, 110, 142
EcoRII CCWGG 1 cut(s) 84
FaiI YATR 2 cut(s) 194, 202
FspBI CTAG 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 68
HinfI GANTC 2 cut(s) 10, 89
Hpy188III TCNNGA 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 20, 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 34, 110, 142
LpnPI CCDG 5 cut(s) 71, 87, 98, 103, 107
MaeI CTAG 1 cut(s) 161
MalI GATC 3 cut(s) 36, 112, 144
MboI GATC 3 cut(s) 34, 110, 142
MluCI AATT 2 cut(s) 48, 78
MnlI CCTC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 3 cut(s) 34, 110, 142
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 10, 89
PfoI TCCNGGA 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 3 cut(s) 34, 110, 142
ScrFI CCNGG 1 cut(s) 86
SetI ASST 1 cut(s) 76
SgeI CNNG 8 cut(s) 50, 86, 97, 98, 130, 134, 152, 173
Sse9I AATT 2 cut(s) 48, 78
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 48, 78
TfiI GAWTC 2 cut(s) 10, 89
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.