RchiOBHm_Chr7g0178981

S-adenosylmethionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
1442394 .. 1443754
1361 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGGCATTTGTTGTTCCCGGCCGCCCTGATGAAACTCCTCATGCACAAAACTATTACAACATGTCACTAGACCTATTTGGTTCTTGCCTCACTGGTATCATTGCCGAAGACAAAGTGGACTCTTTCAATCTACCGATATATAATGCTTCTTTCCAAGAAGTGGAAGCCATTGTGAAAGACAACGGATGTTTCACCATAGAGAATGGAAACCTTGCCTCAAGAAAAGCTACAACCCAATGTGTTTCGCTCAACTGTGAGAGCCGTAATGGAGAATTTTTTTCGGGGGCATTTTGGAGAAGAGATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

4.81

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 75 2e-12 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 246
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 99
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 27
BseX3I CGGCCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 21
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 191
BstMCI CGRYCG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 114
BstZI CGGCCG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 90
CviAII CATG 2 cut(s) 41, 61
CviJI RGCY 4 cut(s) 21, 167, 227, 261
CviKI_1 RGCY 4 cut(s) 21, 167, 227, 261
EaeI YGGCCR 1 cut(s) 19
EagI CGGCCG 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
EclXI CGGCCG 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 19
FaeI CATG 2 cut(s) 44, 64
FaiI YATR 5 cut(s) 42, 62, 139, 141, 197
FatI CATG 2 cut(s) 40, 60
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 18
Hin1II CATG 2 cut(s) 44, 64
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 44
Hsp92II CATG 2 cut(s) 44, 64
LpnPI CCDG 3 cut(s) 31, 39, 78
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 2 cut(s) 119, 309
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 48, 98, 226
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
NciI CCSGG 1 cut(s) 18
NlaIII CATG 2 cut(s) 44, 64
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PscI ACATGT 1 cut(s) 60
SatI GCNGC 1 cut(s) 22
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 18
SetI ASST 3 cut(s) 75, 213, 229
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 272
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 254
TasI AATT 1 cut(s) 272
TauI GCSGC 1 cut(s) 24
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 64
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.