RchiOBHm_Chr7g0185071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030422
Physical Location & Seq
Reverse (-)
5324650 .. 5326212
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGAAGCCTCAACCCGACTCAAACCAAGACAACCCCGACGCCGTCCCCGTCCGATCTCCTCAGAGCCGGACCGCCATACCCTTCGCTCGCAAGAAGTGCAAGAAGATGGGCAGGAATTCAAAAGCTGCTCAGAAGAAGCTGCAGATTCTGCGCCTTCCCCGTCCGATCTCCTCGGAGCCGGACCGCCATAACATTCGATCGGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.88

Weight (kDa)

11.0

Isoelectric Point (pI)

95.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0185071
rosa_samantha Rh7DG071400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 184
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 2 cut(s) 125, 139
AluI AGCT 2 cut(s) 125, 139
AlwNI CAGNNNCTG 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 125, 139
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 69, 181
AvaII GGWCC 2 cut(s) 69, 181
BbvI GCAGC 2 cut(s) 112, 126
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 126, 140
BlsI GCNGC 2 cut(s) 127, 141
Bme18I GGWCC 2 cut(s) 69, 181
BmgT120I GGNCC 2 cut(s) 69, 181
BmiI GGNNCC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 74, 143
BseRI GAGGAG 2 cut(s) 48, 160
BseXI GCAGC 2 cut(s) 112, 126
Bsh1285I CGRYCG 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 200
BsiSI CCGG 2 cut(s) 67, 179
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 53, 165, 197
BspACI CCGC 2 cut(s) 72, 184
BspCNI CTCAG 2 cut(s) 73, 142
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 53, 165, 197
BssNI GRCGYC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 96, 148
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 60, 129
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 56, 168, 200
BstMBI GATC 3 cut(s) 53, 165, 197
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 96, 148
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 112, 126
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 69, 181
CpoI CGGWCCG 2 cut(s) 69, 181
CseI GACGC 1 cut(s) 47
CspI CGGWCCG 2 cut(s) 69, 181
CviJI RGCY 5 cut(s) 7, 66, 125, 139, 178
CviKI_1 RGCY 5 cut(s) 7, 66, 125, 139, 178
DdeI CTNAG 2 cut(s) 60, 129
DpnI GATC 3 cut(s) 55, 167, 199
DpnII GATC 3 cut(s) 53, 165, 197
Eco47I GGWCC 2 cut(s) 69, 181
EcoRI GAATTC 1 cut(s) 115
FaiI YATR 2 cut(s) 77, 189
FaqI GGGAC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 126, 140
Fsp4HI GCNGC 2 cut(s) 126, 140
GlaI GCGC 1 cut(s) 152
GluI GCNGC 2 cut(s) 126, 140
HapII CCGG 2 cut(s) 67, 179
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 2 cut(s) 17, 145
HpaII CCGG 2 cut(s) 67, 179
Hpy188I TCNGA 6 cut(s) 53, 63, 132, 165, 175, 202
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 91, 164
HpyCH4V TGCA 2 cut(s) 99, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 148
HpyF3I CTNAG 2 cut(s) 60, 129
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 53, 165, 197
LmnI GCTCC 2 cut(s) 175, 202
LpnPI CCDG 3 cut(s) 80, 97, 192
Lsp1109I GCAGC 2 cut(s) 112, 126
MalI GATC 3 cut(s) 55, 167, 199
MboI GATC 3 cut(s) 53, 165, 197
MboII GAAGA 2 cut(s) 115, 145
MluCI AATT 1 cut(s) 115
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 3 cut(s) 18, 69, 181
MspI CCGG 2 cut(s) 67, 179
MwoI GCNNNNNNNGC 2 cut(s) 96, 148
NdeII GATC 3 cut(s) 53, 165, 197
NlaIV GGNNCC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 127, 141
Ple19I CGATCG 1 cut(s) 200
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 69, 181
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 148
PsyI GACNNNGTC 1 cut(s) 41
PvuI CGATCG 1 cut(s) 200
Rsr2I CGGWCCG 2 cut(s) 69, 181
RsrII CGGWCCG 2 cut(s) 69, 181
SatI GCNGC 2 cut(s) 126, 140
Sau3AI GATC 3 cut(s) 53, 165, 197
Sau96I GGNCC 2 cut(s) 69, 181
SchI GAGTC 1 cut(s) 11
SetI ASST 2 cut(s) 127, 141
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 69, 181
Sse9I AATT 1 cut(s) 115
SsiI CCGC 2 cut(s) 72, 184
TaqI TCGA 1 cut(s) 196
TasI AATT 1 cut(s) 115
TfiI GAWTC 1 cut(s) 145
TseI GCWGC 2 cut(s) 125, 139
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 69, 181
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.