Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5357930 .. 5358963

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCTTTTCCGAATATGGTCCCAATTGGCGCCATGTAAGGAAGCTCTATACGCTTCATCTTTTCTGTCAAGCAAAAATAGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGAAGTGCTGCTGAGAAAGCTCAAGAAAGCTGCAGAGGAAGGTGGTGTTGTGGATGTTAGTGAGGATATTGGTGTGATGAAAGAGGACAGGTTTGATTTGAAAGCCGTTATTGAGGAAACGTTTTACTTGGCAGAGGCCTTCAATATATCAGATTTTGTTCCTTCCCTTGCTGCAGTTGATATTCAGGGATTGACTAAGCGAATGAAGAAAATTAGTAAGACGGTCGATCCGCTCTTGGAGAAGATAATTGATCAACAAGCACGGACAAGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

6.14

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	346
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	95, 344
AclI	AACGTT	1 cut(s)	233
AclWI	GGATC	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	214, 256
AluBI	AGCT	4 cut(s)	46, 112, 133, 143
AluI	AGCT	4 cut(s)	46, 112, 133, 143
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	3, 249
ApeKI	GCWGC	3 cut(s)	121, 143, 284
AspLEI	GCGC	2 cut(s)	33, 94
AspS9I	GGNCC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	108, 130, 271
BceAI	ACGGC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	364
BfmI	CTRYAG	2 cut(s)	144, 285
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	4 cut(s)	95, 122, 144, 285
BlsI	GCNGC	4 cut(s)	96, 123, 145, 286
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	22, 32
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	31
BseGI	GGATG	2 cut(s)	112, 172
BseMII	CTCAG	2 cut(s)	89, 116
BseXI	GCAGC	3 cut(s)	108, 130, 271
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	5, 251
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	5, 251
Bsp143I	GATC	2 cut(s)	340, 364
BspACI	CCGC	2 cut(s)	95, 344
BspANI	GGCC	2 cut(s)	5, 251
BspCNI	CTCAG	2 cut(s)	90, 117
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	22, 32
BspMAI	CTGCAG	2 cut(s)	148, 289
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	346
BssMI	GATC	2 cut(s)	340, 364
BssNI	GRCGYC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	98, 125, 309
BstF5I	GGATG	2 cut(s)	112, 172
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	33, 94
BstKTI	GATC	2 cut(s)	343, 367
BstMBI	GATC	2 cut(s)	340, 364
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 118, 130
BstSFI	CTRYAG	2 cut(s)	144, 285
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	108, 130, 271
BsuRI	GGCC	2 cut(s)	5, 251
BtsCI	GGATG	2 cut(s)	112, 172
CfoI	GCGC	2 cut(s)	33, 94
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	8 cut(s)	5, 46, 86, 112, 133, 143, 218, 251
CviKI_1	RGCY	8 cut(s)	5, 46, 86, 112, 133, 143, 218, 251
DdeI	CTNAG	3 cut(s)	98, 125, 309
DinI	GGCGCC	1 cut(s)	32
DpnI	GATC	2 cut(s)	342, 366
DpnII	GATC	2 cut(s)	340, 364
Eco147I	AGGCCT	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	32
EheI	GGCGCC	1 cut(s)	32
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	18, 36, 51, 260
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	95, 122, 144, 285
FokI	GGATG	2 cut(s)	119, 179
Fsp4HI	GCNGC	4 cut(s)	95, 122, 144, 285
GlaI	GCGC	2 cut(s)	32, 93
GluI	GCNGC	4 cut(s)	95, 122, 144, 285
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	5, 251
HhaI	GCGC	2 cut(s)	33, 94
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	31, 92
HinP1I	GCGC	2 cut(s)	31, 92
Hpy188I	TCNGA	2 cut(s)	13, 265
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	146, 262, 285
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	146, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 118, 130
HpyF3I	CTNAG	3 cut(s)	98, 125, 309
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	2 cut(s)	31, 92
KasI	GGCGCC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	340, 364
LpnPI	CCDG	3 cut(s)	98, 187, 284
Lsp1109I	GCAGC	3 cut(s)	108, 130, 271
MaeII	ACGT	1 cut(s)	233
MalI	GATC	2 cut(s)	342, 366
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	2 cut(s)	340, 364
MboII	GAAGA	2 cut(s)	331, 367
MfeI	CAATTG	1 cut(s)	25
MluCI	AATT	3 cut(s)	25, 324, 360
Mly113I	GGCGCC	1 cut(s)	31
MnlI	CCTC	6 cut(s)	76, 142, 169, 190, 220, 241
MspA1I	CMGCKG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	52, 118, 130
NarI	GGCGCC	1 cut(s)	31
NdeII	GATC	2 cut(s)	340, 364
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	22, 32
PceI	AGGCCT	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	96, 123, 145, 286
PluTI	GGCGCC	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	22, 32
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	2 cut(s)	148, 289
SatI	GCNGC	4 cut(s)	95, 122, 144, 285
Sau3AI	GATC	2 cut(s)	340, 364
Sau96I	GGNCC	1 cut(s)	20
SetI	ASST	7 cut(s)	48, 114, 135, 145, 157, 206, 236
SfcI	CTRYAG	2 cut(s)	144, 285
SfoI	GGCGCC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	25, 324, 360
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	95, 344
SspDI	GGCGCC	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	25, 324, 360
TauI	GCSGC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	121, 143, 284
TspDTI	ATGAA	3 cut(s)	47, 206, 332
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.