Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9922439 .. 9923631

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTGTTTTGGGTATACATTAAGCAAGAGAAGTTTTGTGATTCCATTGAACAGCATAGATAATATTGCCGATGCTGAAGAAAACTTGGGAGAAATTGAAGTCAGAGAAGCTCATTTGGCCAAGTCCCTGTTCTTCATCGATCCGTGTGATTGGGAAAGGAAGAATCGCTTGAAGGTATATAAAGGCTTGTACTGCATGTCCACTGGAAAATTTAAGAAGGCAGCCGATTTGTGTTCCTGGATTCCATTTCTACCTTCACCTCTTACGAAATATTTCCCTATGACGTCATTTTATACCGTCCTAACAAGCATTATATTTCTGGACAGATTGTCATTCTCTGGTCTGGCAGAGCAGATAAAGCTGGATCGTTATTTGCATCCACACATCAAGTATTACATGAGGGAGATCAGAACCGTTGTTTATTCTCAATTTTTGGAATCCTACAAGTGTGACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03050 ko04066 ko05010 ko05169 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map03050 map04066 map05010 map05169

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

152

Amino Acids

17.9

Weight (kDa)

8.53

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	48 - 110	5.5e-11	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	134, 372
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	49, 98, 172
AhdI	GACNNNNNGTC	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	110, 361
AluI	AGCT	2 cut(s)	110, 361
AlwI	GGATC	2 cut(s)	134, 372
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	238
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	61, 385
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	139, 364, 405
BspANI	GGCC	1 cut(s)	119
BspDI	ATCGAT	1 cut(s)	138
BspPI	GGATC	2 cut(s)	134, 372
BsrI	ACTGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	139, 364, 405
BssNAI	GTATAC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	298, 415
BstACI	GRCGYC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	3 cut(s)	142, 367, 408
BstMBI	GATC	3 cut(s)	139, 364, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 192, 358
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	196, 397
CviJI	RGCY	5 cut(s)	110, 119, 186, 224, 361
CviKI_1	RGCY	5 cut(s)	110, 119, 186, 224, 361
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	3 cut(s)	141, 366, 407
DpnII	GATC	3 cut(s)	139, 364, 405
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	236
FaeI	CATG	2 cut(s)	199, 400
FaiI	YATR	9 cut(s)	15, 56, 178, 180, 197, 281, 294, 314, 398
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	195, 396
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	199, 400
HinfI	GANTC	4 cut(s)	40, 163, 241, 437
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	15, 201
Hpy188I	TCNGA	2 cut(s)	104, 410
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	2 cut(s)	15, 201
HpyAV	CCTTC	3 cut(s)	166, 211, 264
HpyCH4III	ACNGT	2 cut(s)	298, 415
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	195, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 192, 358
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	199, 400
Kzo9I	GATC	3 cut(s)	139, 364, 405
LpnPI	CCDG	8 cut(s)	140, 189, 223, 250, 305, 324, 329, 347
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	61, 385
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	141, 366, 407
MboI	GATC	3 cut(s)	139, 364, 405
MboII	GAAGA	3 cut(s)	89, 124, 172
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	93, 209, 428
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	2 cut(s)	270, 393
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	20, 213
Msp20I	TGGCCA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	116, 192, 358
NdeII	GATC	3 cut(s)	139, 364, 405
NlaIII	CATG	2 cut(s)	199, 400
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	4 cut(s)	40, 163, 241, 437
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	20, 213
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	139, 364, 405
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	6 cut(s)	112, 177, 256, 262, 287, 363
SfaNI	GCATC	2 cut(s)	61, 385
Sse9I	AATT	3 cut(s)	93, 209, 428
SspI	AATATT	2 cut(s)	64, 272
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	298, 415
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	93, 209, 428
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	4 cut(s)	40, 163, 241, 437
Tru1I	TTAA	2 cut(s)	20, 213
Tru9I	TTAA	2 cut(s)	20, 213
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.