RchiOBHm_Chr7g0191451

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
10225105 .. 10226015
911 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGAGCTCTCTGAATCGTCCTCCTCCTCCTCTGTTTCCCCAAATCTGGATTTGCATACCGGCAACAGCAACGAAATCGATCAGGTTCAGCTCAACCATTCCGACATAGGGTCTCAACAGTCCACCACCACCGCCGCCTACCAGCAGCTGGACAGTCCCTCCGACTCCGGTGTTGACGCGGCGGTCAGTCATTCCAGTCCCGATCCCGAGGTCGTGGATCACGCTGTCGTCGTTGTTGATGAGATTGAGAGATTGGATTTGAGAGGAGACGATGCTGATGTAGCGGTGGAGGTGGCGGCGGCGGCGGCGGCAGCCGAGGTAGAGGAAGGGGGAGAGGTTGAGGCGGAGAAGAGTTCTAATGGTGGTGGAGAAATCGAAAACGGAAATGAAAGCGAGAGACAGAGCGAGGAAGAAGAGAGCAATGAAGGAGAAACCAGGAGTGAGAATGGAGAGAAGAAGGGGGAGAATATAACAGAAGGTATCAGTATCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

164

Amino Acids

17.15

Weight (kDa)

4.05

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 148
AccII CGCG 1 cut(s) 179
AclWI GGATC 2 cut(s) 197, 225
AfiI CCNNNNNNNGG 3 cut(s) 46, 108, 148
AhdI GACNNNNNGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 3 cut(s) 7, 91, 148
AluI AGCT 3 cut(s) 7, 91, 148
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 117, 261, 391
AlwI GGATC 2 cut(s) 197, 225
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 145, 311
AvaI CYCGRG 1 cut(s) 206
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 157, 323
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 117, 261, 391
BisI GCNGC 9 cut(s) 135, 146, 180, 297, 300, 303, 306, 309, 312
BlsI GCNGC 9 cut(s) 136, 147, 181, 298, 301, 304, 307, 310, 313
Bme1390I CCNGG 1 cut(s) 436
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 262
Bsa29I ATCGAT 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 207, 315
BsaWI WCCGGW 2 cut(s) 167, 489
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 108, 148
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 436
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 207, 315
BseLI CCNNNNNNNGG 3 cut(s) 46, 108, 148
BseMI GCAATG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 4 cut(s) 13, 16, 19, 279
BseXI GCAGC 2 cut(s) 157, 323
Bsh1236I CGCG 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 60, 168, 490
BslFI GGGAC 2 cut(s) 141, 183
BslI CCNNNNNNNGG 3 cut(s) 46, 108, 148
BsmAI GTCTC 3 cut(s) 117, 261, 391
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 141, 183
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 79, 202, 217
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 1 cut(s) 179
BspPI GGATC 2 cut(s) 197, 225
BspTNI GGTCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 207, 315
BssMI GATC 3 cut(s) 79, 202, 217
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 120, 155
Bst6I CTCTTC 2 cut(s) 344, 408
BstFNI CGCG 1 cut(s) 179
BstKTI GATC 3 cut(s) 82, 205, 220
BstMAI GTCTC 3 cut(s) 117, 261, 391
BstMBI GATC 3 cut(s) 79, 202, 217
BstMWI GCNNNNNNNGC 5 cut(s) 281, 302, 305, 308, 311
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 434
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 157, 323
Bsu15I ATCGAT 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 59
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 185
CviJI RGCY 4 cut(s) 7, 91, 148, 314
CviKI_1 RGCY 4 cut(s) 7, 91, 148, 314
DpnI GATC 3 cut(s) 81, 204, 219
DpnII GATC 3 cut(s) 79, 202, 217
DrdI GACNNNNNNGTC 1 cut(s) 182
DriI GACNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 344, 408
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 2 cut(s) 344, 408
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 261
FaiI YATR 3 cut(s) 57, 107, 470
FaqI GGGAC 2 cut(s) 141, 183
Fnu4HI GCNGC 9 cut(s) 135, 146, 180, 297, 300, 303, 306, 309, 312
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 9 cut(s) 135, 146, 180, 297, 300, 303, 306, 309, 312
GluI GCNGC 9 cut(s) 135, 146, 180, 297, 300, 303, 306, 309, 312
HapII CCGG 3 cut(s) 60, 168, 490
HgaI GACGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 14, 164
HpaII CCGG 3 cut(s) 60, 168, 490
Hpy166II GTNNAC 2 cut(s) 123, 175
Hpy188I TCNGA 3 cut(s) 13, 103, 163
Hpy188III TCNNGA 3 cut(s) 47, 200, 206
Hpy8I GTNNAC 2 cut(s) 123, 175
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 320, 419, 451, 470
HpyCH4III ACNGT 2 cut(s) 120, 155
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 302, 305, 308, 311
Kzo9I GATC 3 cut(s) 79, 202, 217
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 32, 68, 73, 134, 155, 181, 208, 421, 448
Lsp1109I GCAGC 2 cut(s) 157, 323
LweI GCATC 1 cut(s) 262
MalI GATC 3 cut(s) 81, 204, 219
MboI GATC 3 cut(s) 79, 202, 217
MboII GAAGA 4 cut(s) 361, 422, 425, 466
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 126, 186
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 3 cut(s) 60, 168, 490
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 5 cut(s) 281, 302, 305, 308, 311
NdeII GATC 3 cut(s) 79, 202, 217
NmeAIII GCCGAG 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 9 cut(s) 136, 147, 181, 298, 301, 304, 307, 310, 313
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 9 cut(s) 135, 146, 180, 297, 300, 303, 306, 309, 312
Sau3AI GATC 3 cut(s) 79, 202, 217
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 9
SetI ASST 9 cut(s) 9, 87, 93, 150, 213, 294, 321, 339, 481
SfaNI GCATC 1 cut(s) 262
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 2 cut(s) 120, 155
TaqI TCGA 2 cut(s) 78, 375
TauI GCSGC 7 cut(s) 137, 182, 299, 302, 305, 308, 311
TfiI GAWTC 1 cut(s) 14
TseI GCWGC 2 cut(s) 145, 311
TspDTI ATGAA 2 cut(s) 402, 438
TspGWI ACGGA 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.