RchiOBHm_Chr7g0193031

branched-chain-amino-acid aminotransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
11449805 .. 11452804
3000 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGATGAATTGGGTTGAAGGTTGGGTTTTGGAACTGGACGGAGGTGCTGATCAAAAGATAGAAGGCAATAATGCTAGTGCTGATGATGCAATCATGCTTGACAAGGATGACTATGTATCTGAAACAAATGCTACGAACATTGTAAGTCTATGGTTCACTTATATGGATAATAGATGGAATACTTGCATGATATGTATAGATGGTTACACAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.09

Weight (kDa)

4.05

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 17
BccI CCATC 2 cut(s) 168, 194
BclI TGATCA 1 cut(s) 49
BfaI CTAG 1 cut(s) 75
BmsI GCATC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 39
Bsp143I GATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 112
CviAII CATG 2 cut(s) 94, 187
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
FaeI CATG 2 cut(s) 97, 190
FaiI YATR 9 cut(s) 95, 114, 151, 162, 164, 188, 193, 197, 214
FatI CATG 2 cut(s) 93, 186
FbaI TGATCA 1 cut(s) 49
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 75
Hin1II CATG 2 cut(s) 97, 190
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 11, 56
HpyCH4V TGCA 2 cut(s) 89, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 97, 190
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 1 cut(s) 20
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MluCI AATT 1 cut(s) 7
MnlI CCTC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 49
NlaIII CATG 2 cut(s) 97, 190
RseI CAYNNNNRTG 1 cut(s) 161
Sau3AI GATC 1 cut(s) 49
SetI ASST 2 cut(s) 22, 46
SfaNI GCATC 1 cut(s) 76
SgeI CNNG 7 cut(s) 47, 87, 106, 110, 115, 195, 199
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 75
TasI AATT 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 54
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.