RchiOBHm_Chr7g0194381

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
12458507 .. 12459504
998 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGAGCTGCTTTTGCTTCAAGAGTTCCAAAGTTGATAGACATAGGACTGGATATGAGGAGCCTATTATCCTTGCTTCAGAAACTGTTTTTACCGTACATGAAGTGGAGGCCTTGTATGATCTGTTTAGGAAAATAAGCAATTCCATTATTAAAGATGGTCTTCTACACAAGGTATTTGATTTGTTTGATGTCAAGCGTAACGGGGTAATTGAATTTGGAGAATTTGTTAGGTCATTGAGCATTTTTCACCCAAATGCTTCTGAAGCAAGCAAAATTTCATGTATGATAAGTGTTGTAAAATAA

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

6.89

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 212, 221, 273
AcuI CTGAAG 2 cut(s) 60, 282
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 2 cut(s) 19, 212
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 3 cut(s) 212, 221, 273
AsuHPI GGTGA 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 1 cut(s) 149
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 152
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 210, 240
Bse1I ACTGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 118
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 52
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 85, 94
BstC8I GCNNGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 12, 263
BstV2I GAAGAC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 95
CviAII CATG 2 cut(s) 98, 279
CviJI RGCY 3 cut(s) 6, 61, 110
CviKI_1 RGCY 3 cut(s) 6, 61, 110
CviQI GTAC 1 cut(s) 95
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 60, 282
FaeI CATG 2 cut(s) 101, 282
FaiI YATR 6 cut(s) 42, 54, 99, 117, 280, 284
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 97, 278
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 2 cut(s) 101, 282
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 79, 262
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 85, 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 263
Hsp92II CATG 2 cut(s) 101, 282
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 152
MluCI AATT 5 cut(s) 139, 207, 212, 221, 273
MnlI CCTC 2 cut(s) 49, 100
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 12, 263
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 101, 282
NlaIV GGNNCC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 110
PkrI GCNGC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 118
SetI ASST 3 cut(s) 8, 174, 233
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 5 cut(s) 139, 207, 212, 221, 273
SseBI AGGCCT 1 cut(s) 110
StuI AGGCCT 1 cut(s) 110
TaaI ACNGT 2 cut(s) 85, 94
TasI AATT 5 cut(s) 139, 207, 212, 221, 273
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 114, 267
XapI RAATTY 3 cut(s) 212, 221, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.