RchiOBHm_Chr7g0194831

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
12862205 .. 12862528
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGCAGTTCGATGTATCAATTTCAGCTTTTCCAAGTTTGAAAATATCTGTGAAAATTGGTGTACTGATGAGCGGGGGAATAATTTTTGTGCTGTGGTGCATGATTTGGGTTTGGAAGAGGGTTCGTGTTACTCAACGTGAACAGTCATTCACGGAAATGTCCAACTTAACCATTGATCATTCGTCTCCACAATTTATGATGGGTCTTGATGCAGCGACCATCAAATCGTATCCGAAGACTGAACTTGGTGAGAGTGGGGAATTGCCGGAGCCAAATGACAATACTTGCTTGATATGTTTGGGTGACTTCCTGACTATACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

4.94

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 1 cut(s) 72
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 260, 314
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 193, 227
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 189
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 72
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 110
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 242
BsuI GTATCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 100
CviJI RGCY 2 cut(s) 26, 271
CviKI_1 RGCY 2 cut(s) 26, 271
CviQI GTAC 1 cut(s) 62
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 101, 197, 295, 317, 322
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
HapII CCGG 1 cut(s) 266
Hin1II CATG 1 cut(s) 103
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 260, 314
Hpy166II GTNNAC 2 cut(s) 62, 140
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 206, 310
Hpy8I GTNNAC 2 cut(s) 62, 140
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 4, 99, 212
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 127, 302
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 72
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 127, 247
MluCI AATT 5 cut(s) 18, 54, 81, 191, 260
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 1 cut(s) 111
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 266
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 175
SetI ASST 2 cut(s) 28, 139
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 5 cut(s) 18, 54, 81, 191, 260
SsiI CCGC 1 cut(s) 72
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 9
TasI AATT 5 cut(s) 18, 54, 81, 191, 260
TatI WGTACW 1 cut(s) 61
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.