RchiOBHm_Chr7g0194881

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
12887674 .. 12887975
302 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGTGTATATTCAATGCTTCTTGCGATACTCATTTTGGCTTTTGTTGTGATGTTAATGATGAAACTTCCCAGAAGCTTGCACGTAAAATTCTATCATTTTTACCCATGTTTAGTTCAATTGCTTGTTGCTCATTAATGTCAATGCCTGACCCAGATTTTGGTTATGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAATGCAACTTTGTTATTTCCACTTAGGAATACCAAACACTAG

Protein Analysis

79

Amino Acids

8.94

Weight (kDa)

6.68

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 1 - 61 2.7e-07 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AcsI RAATTY 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 4 cut(s) 13, 117, 189, 197
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
ApoI RAATTY 1 cut(s) 87
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 1 cut(s) 134
BfaI CTAG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 78
CviAII CATG 1 cut(s) 106
CviJI RGCY 2 cut(s) 39, 76
CviKI_1 RGCY 2 cut(s) 39, 76
DdeI CTNAG 1 cut(s) 221
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 8, 107, 165
FatI CATG 1 cut(s) 105
FspBI CTAG 1 cut(s) 238
Hin1II CATG 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 80, 203
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 109
LpnPI CCDG 3 cut(s) 83, 159, 165
MaeI CTAG 1 cut(s) 238
MaeII ACGT 1 cut(s) 82
MfeI CAATTG 1 cut(s) 117
MluCI AATT 2 cut(s) 87, 117
MseI TTAA 2 cut(s) 54, 134
MunI CAATTG 1 cut(s) 117
NlaIII CATG 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 134
SaqAI TTAA 2 cut(s) 54, 134
SetI ASST 2 cut(s) 78, 85
SgeI CNNG 8 cut(s) 33, 82, 89, 93, 118, 135, 158, 164
Sse9I AATT 2 cut(s) 87, 117
SspMI CTAG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 85
TasI AATT 2 cut(s) 87, 117
Tru1I TTAA 2 cut(s) 54, 134
Tru9I TTAA 2 cut(s) 54, 134
TspDTI ATGAA 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 158
VspI ATTAAT 1 cut(s) 134
XapI RAATTY 1 cut(s) 87
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.