RchiOBHm_Chr7g0196501
ERF Family

Belongs to the small GTPase superfamily. Arf family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
14503479 .. 14505489
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGATCATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAAGGTCTTATTTTTGTGGTTGATTGCAATGACAGGGATCGAGTTGTTGAGGCAAGGGATGAGTTGCACAGGATGGTTCTTGTTCTTTGTTGTTCTAAATTGTTGGCTTTTGATGAACTGAGGGATGTTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTACTGCAATGAATGCTGCAGAAATAACTGATAAGCTTAGGCTTCATTCTCTCTGCCAACGTCACTGGTACATTCAGAGCACATGTCCAACCTTGGGCGAGGGACTGTACAAGGGATTGGATTGGCTTTCCAATAACATTGCTAGCAAGGCAAGTTCAATAAAATCAATCTTTTACAGTAATTTTAGCTCATGGTGTTAG

Protein Analysis

134

Amino Acids

15.54

Weight (kDa)

7.63

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 3 - 115 3.9e-36 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 87
AfaI GTAC 2 cut(s) 275, 314
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 363
AluBI AGCT 2 cut(s) 241, 393
AluI AGCT 2 cut(s) 241, 393
Alw21I GWGCWC 1 cut(s) 287
AlwI GGATC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 109
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 3 cut(s) 76, 219, 342
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 6, 106, 120, 172
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 3 cut(s) 76, 219, 342
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 3 cut(s) 3, 79, 199
BspCNI CTCAG 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 87
BsrDI GCAATG 3 cut(s) 76, 219, 342
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 3, 79, 199
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 312, 383
BstAPI GCANNNNNTGC 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 161, 242
BstF5I GGATG 4 cut(s) 6, 106, 120, 172
BstKTI GATC 3 cut(s) 6, 82, 202
BstMBI GATC 3 cut(s) 3, 79, 199
BstMWI GCNNNNNNNGC 2 cut(s) 218, 353
BstNSI RCATGY 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsCI GGATG 4 cut(s) 6, 106, 120, 172
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 349
Csp6I GTAC 2 cut(s) 274, 313
CviAII CATG 2 cut(s) 288, 396
CviJI RGCY 5 cut(s) 149, 241, 247, 331, 393
CviKI_1 RGCY 5 cut(s) 149, 241, 247, 331, 393
CviQI GTAC 2 cut(s) 274, 313
DdeI CTNAG 2 cut(s) 161, 242
DpnI GATC 3 cut(s) 5, 81, 201
DpnII GATC 3 cut(s) 3, 79, 199
Eco130I CCWWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 291, 399
FaiI YATR 2 cut(s) 289, 397
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 287, 395
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 3 cut(s) 113, 127, 179
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 222
Hin1II CATG 2 cut(s) 291, 399
HindIII AAGCTT 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 312, 383
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 69, 109, 212, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 353
HpyF3I CTNAG 2 cut(s) 161, 242
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 291, 399
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 79, 199
LpnPI CCDG 4 cut(s) 47, 61, 97, 256
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 266
MalI GATC 3 cut(s) 5, 81, 201
MboI GATC 3 cut(s) 3, 79, 199
MboII GAAGA 1 cut(s) 194
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 140, 385
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 4 cut(s) 15, 85, 156, 298
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 218, 353
NdeII GATC 3 cut(s) 3, 79, 199
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 2 cut(s) 291, 399
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 1 cut(s) 291
PciI ACATGT 1 cut(s) 287
PctI GAATGC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 223
PscI ACATGT 1 cut(s) 287
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 275, 314
RsaNI GTAC 2 cut(s) 274, 313
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 3 cut(s) 3, 79, 199
SduI GDGCHC 1 cut(s) 287
SetI ASST 5 cut(s) 49, 243, 268, 299, 395
SfcI CTRYAG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 140, 385
SspMI CTAG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 312, 383
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 140, 385
TatI WGTACW 1 cut(s) 312
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 171, 230, 239
TspRI CASTG 1 cut(s) 275
XceI RCATGY 1 cut(s) 291
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.