RchiOBHm_Chr7g0197581

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
15506320 .. 15508368
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGGGGATATTCGGCAAGAAGGGCGCATCCAGATTCTCTGCCTCTTCCACAGCAGAACAAGTTACTCAAGGAATTGATGGAACTGGTCTTACTGCCATTGTTACAGCAATCCTTAAAGGAATCTCCAATGCTAAGATTGATGTCATGGAGTTAGATCTCAGCTCAATGGCATCTGTAAGAAAATTTGCAGAAGAGTATAATTCCAAAGGCCTTCCATCGAATATCCTTATATACAACAACTATGTTGCTTATGCAGAATCCAAGCTTGCTAACATATTGCATGCTAATGAGCTTACAAGGCGCCTCAAGGAAGAAAGGGTTGAGATGACTGCTAATTCTCTTCATCATGAAACCATTCGCACTAATATTATGCATAATGATATCCATGTAAAGTCGGCAACCACATACTTCTTGGCACTGAATCCACAAGTTAAGGGAGTATGTGGCGAATACTATGTGGACTGTAACATCGCCAAACCGAGCTCTCAGGCAGTCAGGCAAATGATGCAGATTTGGCCACGAGACTCTGGGATTTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

180

Amino Acids

19.83

Weight (kDa)

8.51

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 301
AluBI AGCT 5 cut(s) 162, 265, 292, 483, 539
AluI AGCT 5 cut(s) 162, 265, 292, 483, 539
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 516
AoxI GGCC 2 cut(s) 208, 515
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 2 cut(s) 26, 303
BalI TGGCCA 1 cut(s) 517
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 485
BauI CACGAG 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 485
BccI CCATC 2 cut(s) 71, 223
BcoDI GTCTC 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 304
BglII AGATCT 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 302
BmsI GCATC 3 cut(s) 35, 179, 495
BpuEI CTTGAG 2 cut(s) 51, 290
BsaHI GRCGYC 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 172, 500
BseNI ACTGG 1 cut(s) 88
BshFI GGCC 2 cut(s) 210, 517
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 516
BsnI GGCC 2 cut(s) 210, 517
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 2 cut(s) 210, 517
BspCNI CTCAG 2 cut(s) 171, 499
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 88
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 3 cut(s) 49, 186, 345
BstACI GRCGYC 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 267, 282
BstDEI CTNAG 3 cut(s) 132, 158, 486
BstF5I GGATG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 2 cut(s) 26, 303
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 21, 298, 505, 514
BstNSI RCATGY 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 2 cut(s) 210, 517
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 2 cut(s) 267, 282
CciI TCATGA 1 cut(s) 346
CfoI GCGC 2 cut(s) 26, 303
CviAII CATG 4 cut(s) 145, 281, 347, 386
CviJI RGCY 7 cut(s) 162, 210, 265, 292, 483, 517, 539
CviKI_1 RGCY 7 cut(s) 162, 210, 265, 292, 483, 517, 539
DdeI CTNAG 3 cut(s) 132, 158, 486
DinI GGCGCC 1 cut(s) 302
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 3 cut(s) 49, 186, 345
EarI CTCTTC 3 cut(s) 49, 186, 345
Ecl136II GAGCTC 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 485
Eco32I GATATC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 483
EcoRV GATATC 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 485
EgeI GGCGCC 1 cut(s) 302
EheI GGCGCC 1 cut(s) 302
FaeI CATG 4 cut(s) 148, 284, 350, 389
FatI CATG 4 cut(s) 144, 280, 346, 385
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 485
GlaI GCGC 2 cut(s) 25, 302
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 2 cut(s) 210, 517
HhaI GCGC 2 cut(s) 26, 303
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 148, 284, 350, 389
Hin6I GCGC 2 cut(s) 24, 301
HinP1I GCGC 2 cut(s) 24, 301
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 5 cut(s) 33, 120, 257, 421, 524
Hpy166II GTNNAC 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 30, 347
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 13, 221
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 5 cut(s) 188, 254, 280, 373, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 298, 505, 514
HpyF3I CTNAG 3 cut(s) 132, 158, 486
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 148, 284, 350, 389
HspAI GCGC 2 cut(s) 24, 301
KasI GGCGCC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 43, 69, 473, 481, 513
LweI GCATC 3 cut(s) 35, 179, 495
MaeIII GTNAC 3 cut(s) 61, 100, 464
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 36, 203, 323, 332
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 485
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 4 cut(s) 72, 182, 199, 334
MluNI TGGCCA 1 cut(s) 517
Mly113I GGCGCC 1 cut(s) 301
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 2 cut(s) 52, 314
Mox20I TGGCCA 1 cut(s) 517
Mph1103I ATGCAT 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 517
MseI TTAA 2 cut(s) 114, 432
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 517
MwoI GCNNNNNNNGC 4 cut(s) 21, 298, 505, 514
NarI GGCGCC 1 cut(s) 301
NdeII GATC 1 cut(s) 154
NlaIII CATG 4 cut(s) 148, 284, 350, 389
NlaIV GGNNCC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 1 cut(s) 346
PceI AGGCCT 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 4 cut(s) 33, 120, 257, 421
PleI GAGTC 1 cut(s) 518
PluTI GGCGCC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 485
PspN4I GGNNCC 1 cut(s) 302
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 2 cut(s) 114, 432
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 485
SetI ASST 5 cut(s) 164, 267, 294, 485, 541
SfaNI GCATC 3 cut(s) 35, 179, 495
SfoI GGCGCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 66, 305
SmoI CTYRAG 2 cut(s) 66, 305
SphI GCATGC 1 cut(s) 284
Sse9I AATT 4 cut(s) 72, 182, 199, 334
SseBI AGGCCT 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 300
SspI AATATT 1 cut(s) 367
SstI GAGCTC 1 cut(s) 485
StuI AGGCCT 1 cut(s) 210
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 218
TasI AATT 4 cut(s) 72, 182, 199, 334
TfiI GAWTC 4 cut(s) 33, 120, 257, 421
Tru1I TTAA 2 cut(s) 114, 432
Tru9I TTAA 2 cut(s) 114, 432
TscAI CASTG 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 332, 363
TspRI CASTG 1 cut(s) 423
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.