RchiOBHm_Chr7g0198791

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
16787116 .. 16787280
165 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 165 bp
ATGAGCTTCTTCATCAAGCACTTGCTTCTCATCCCTCTCTTCCACGCCATTTCCAATGCCGCCACTTTCTTTATCCGAAACAACTGTCCCTACACTGTTTGGGCGGCCGCCATCCCCGGAGGTGGCAGCAGCTCAACCGCGGCGAATCCTGAACCCTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

54

Amino Acids

5.78

Weight (kDa)

9.19

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 60, 104, 108, 138, 140
AcoI YGGCCR 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 6, 132
AluI AGCT 2 cut(s) 6, 132
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 126, 129
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AsuC2I CCSGG 1 cut(s) 117
BbvI GCAGC 2 cut(s) 138, 141
BccI CCATC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 117
BisI GCNGC 6 cut(s) 60, 105, 108, 127, 130, 141
BlsI GCNGC 6 cut(s) 61, 106, 109, 128, 131, 142
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 115, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 115, 138
BseGI GGATG 2 cut(s) 30, 111
BseLI CCNNNNNNNGG 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 138, 141
Bsh1236I CGCG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 1 cut(s) 107
BspACI CCGC 5 cut(s) 60, 104, 108, 138, 140
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 115, 138
Bst4CI ACNGT 2 cut(s) 86, 97
Bst6I CTCTTC 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 30, 111
BstFNI CGCG 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 138, 141
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 30, 111
BtsIMutI CAGTG 1 cut(s) 93
CciNI GCGGCCGC 1 cut(s) 105
Cfr42I CCGCGG 1 cut(s) 141
CviJI RGCY 3 cut(s) 6, 107, 132
CviKI_1 RGCY 3 cut(s) 6, 107, 132
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EclXI CGGCCG 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 105
FaqI GGGAC 1 cut(s) 72
Fnu4HI GCNGC 6 cut(s) 60, 105, 108, 127, 130, 141
FokI GGATG 2 cut(s) 17, 98
Fsp4HI GCNGC 6 cut(s) 60, 105, 108, 127, 130, 141
GluI GCNGC 6 cut(s) 60, 105, 108, 127, 130, 141
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 117
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 86, 97
KspI CCGCGG 1 cut(s) 141
LpnPI CCDG 1 cut(s) 130
Lsp1109I GCAGC 2 cut(s) 138, 141
MboII GAAGA 1 cut(s) 31
MnlI CCTC 2 cut(s) 45, 113
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 140
NciI CCSGG 1 cut(s) 117
NotI GCGGCCGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 6 cut(s) 61, 106, 109, 128, 131, 142
SacII CCGCGG 1 cut(s) 141
SatI GCNGC 6 cut(s) 60, 105, 108, 127, 130, 141
ScrFI CCNGG 1 cut(s) 117
SetI ASST 3 cut(s) 8, 124, 134
Sfr303I CCGCGG 1 cut(s) 141
SgeI CNNG 7 cut(s) 28, 34, 56, 128, 129, 151, 161
SgrBI CCGCGG 1 cut(s) 141
SsiI CCGC 5 cut(s) 60, 104, 108, 138, 140
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 86, 97
TauI GCSGC 4 cut(s) 62, 107, 110, 143
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 100
TseI GCWGC 2 cut(s) 126, 129
TspRI CASTG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.