RchiOBHm_Chr7g0199341

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
17378011 .. 17378592
582 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGCCTCCAAACGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCTTCCCACTTCCTGCAGCGCCGGACATGTTTCATTGGCAAGCAACAATTATGGGACCTTTGATCCTCACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTCTACCCGAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTCAAAGAACAATGGAGTCCAGCTCTTACTATCTCTAAGGTTTGGCTTTGTTATCTTCCAAGAACAATAATTAGACCCATGTTAATTTCTAAGTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

101

Amino Acids

11.56

Weight (kDa)

9.8

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 35 - 84 2.5e-19 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 54, 104
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 22, 127
AluBI AGCT 2 cut(s) 28, 227
AluI AGCT 2 cut(s) 28, 227
AlwI GGATC 2 cut(s) 54, 104
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 102
AvaII GGWCC 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 211, 243
Bse21I CCTNAGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 46, 109
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 2 cut(s) 54, 104
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 187
BssMI GATC 2 cut(s) 46, 109
BstAFI CTTAAG 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 4 cut(s) 135, 153, 240, 294
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 49, 112
BstMBI GATC 2 cut(s) 46, 109
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 77
BstPAI GACNNNNGTC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 102
CviAII CATG 2 cut(s) 74, 283
CviJI RGCY 4 cut(s) 5, 28, 227, 250
CviKI_1 RGCY 4 cut(s) 5, 28, 227, 250
DdeI CTNAG 4 cut(s) 135, 153, 240, 294
DpnI GATC 2 cut(s) 48, 111
DpnII GATC 2 cut(s) 46, 109
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 102
Eco81I CCTNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 102
EcoRV GATATC 1 cut(s) 202
FaeI CATG 2 cut(s) 77, 286
FaiI YATR 3 cut(s) 75, 99, 284
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 73, 282
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 77, 286
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 2 cut(s) 19, 197
HpyAV CCTTC 2 cut(s) 16, 37
HpyCH4V TGCA 3 cut(s) 40, 63, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 4 cut(s) 135, 153, 240, 294
Hsp92II CATG 2 cut(s) 77, 286
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 46, 109
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 73, 82, 237
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 24
MalI GATC 2 cut(s) 48, 111
MboI GATC 2 cut(s) 46, 109
MboII GAAGA 3 cut(s) 41, 151, 251
MflI RGATCY 1 cut(s) 46
MluCI AATT 3 cut(s) 94, 273, 288
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 3 cut(s) 16, 123, 215
MseI TTAA 2 cut(s) 30, 287
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 2 cut(s) 46, 109
NlaIII CATG 2 cut(s) 77, 286
NlaIV GGNNCC 1 cut(s) 103
NspI RCATGY 1 cut(s) 77
PciI ACATGT 1 cut(s) 73
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 102
PscI ACATGT 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 102
PspPPI RGGWCCY 1 cut(s) 102
PstI CTGCAG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 46
SaqAI TTAA 2 cut(s) 30, 287
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 46, 109
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 229
SetI ASST 7 cut(s) 30, 107, 136, 141, 159, 229, 246
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 94, 273, 288
TasI AATT 3 cut(s) 94, 273, 288
Tru1I TTAA 2 cut(s) 30, 287
Tru9I TTAA 2 cut(s) 30, 287
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 69
Vha464I CTTAAG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 102
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.