RchiOBHm_Chr7g0199471

Uncharacterised protein family (UPF0220)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
17525106 .. 17528394
3289 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 159 bp
ATGTTCAATTGCGTGAAGAGAGATGACATTGATTGCTCTCCTTACGAAGAGGGCGAGTGGAGGTTTATCTATCTGAGGATCGGAGGGTGCATTAAATGTAGGCTTAAAAGATCATCTGACAATACAATACATTATATTGTATTGTGTGCCAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.23

Weight (kDa)

8.35

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 7
AlwI GGATC 1 cut(s) 86
BseMII CTCAG 1 cut(s) 65
Bsp143I GATC 2 cut(s) 78, 110
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 86
BssMI GATC 2 cut(s) 78, 110
Bst6I CTCTTC 2 cut(s) 11, 42
BstDEI CTNAG 1 cut(s) 74
BstKTI GATC 2 cut(s) 81, 113
BstMBI GATC 2 cut(s) 78, 110
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DdeI CTNAG 1 cut(s) 74
DpnI GATC 2 cut(s) 80, 112
DpnII GATC 2 cut(s) 78, 110
Eam1104I CTCTTC 2 cut(s) 11, 42
EarI CTCTTC 2 cut(s) 11, 42
FaiI YATR 1 cut(s) 135
Hpy188I TCNGA 3 cut(s) 75, 83, 118
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 74
Kzo9I GATC 2 cut(s) 78, 110
MalI GATC 2 cut(s) 80, 112
MboI GATC 2 cut(s) 78, 110
MboII GAAGA 2 cut(s) 28, 59
MfeI CAATTG 1 cut(s) 7
MluCI AATT 1 cut(s) 7
MnlI CCTC 4 cut(s) 43, 54, 69, 77
MseI TTAA 2 cut(s) 93, 105
MunI CAATTG 1 cut(s) 7
NdeII GATC 2 cut(s) 78, 110
PcsI WCGNNNNNNNCGW 1 cut(s) 51
SaqAI TTAA 2 cut(s) 93, 105
Sau3AI GATC 2 cut(s) 78, 110
SetI ASST 1 cut(s) 65
SgeI CNNG 2 cut(s) 25, 67
Sse9I AATT 1 cut(s) 7
TasI AATT 1 cut(s) 7
Tru1I TTAA 2 cut(s) 93, 105
Tru9I TTAA 2 cut(s) 93, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.