Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17659284 .. 17659828

Gene Structure 545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCTGGAGGTGGCTCTCGCTTGTGGGATGTAGATGGGAATGAGTATATTGACTATGTGGGTTCTTGGGGCCCTGCAATAATTGGACATGGAGATGATGAGGGACTTGCAGCTTTGGCTGAAACAATGAAGAAGGGAACAAGCTTCGGTGCACCATGTCTTCAAGAAAATGTTATGGCAGAAATGATGATCTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

77

Amino Acids

8.19

Weight (kDa)

4.21

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	5 - 77	5e-09	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	113, 144, 197
AluI	AGCT	3 cut(s)	113, 144, 197
Alw21I	GWGCWC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	70
ApaI	GGGCCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	70, 71
BaeGI	GKGCMC	2 cut(s)	74, 154
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	70, 71
BmiI	GGNNCC	2 cut(s)	71, 72
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	207
BseSI	GKGCMC	2 cut(s)	74, 154
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	74, 154
Bsp143I	GATC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	71, 72
BssMI	GATC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSLI	GKGCMC	2 cut(s)	74, 154
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	70, 71
CviAII	CATG	2 cut(s)	89, 156
CviJI	RGCY	6 cut(s)	15, 72, 113, 119, 144, 197
CviKI_1	RGCY	6 cut(s)	15, 72, 113, 119, 144, 197
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoRII	CCWGG	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	92, 159
FaiI	YATR	6 cut(s)	48, 57, 90, 157, 176, 209
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	88, 155
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	92, 159
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	152, 229
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	152, 229
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	77, 110, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	92, 159
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	2 cut(s)	18, 87
Lsp1109I	GCAGC	1 cut(s)	122
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	142, 152
MhlI	GDGCHC	2 cut(s)	74, 154
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	93, 212
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	2 cut(s)	92, 159
NlaIV	GGNNCC	2 cut(s)	71, 72
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	71, 72
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	70, 71
PvuII	CAGCTG	1 cut(s)	197
RseI	CAYNNNNRTG	2 cut(s)	93, 212
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	70, 71
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	74, 154
SetI	ASST	4 cut(s)	13, 115, 146, 199
SmiMI	CAYNNNNRTG	2 cut(s)	93, 212
Sse9I	AATT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	4
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	81
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.