RchiOBHm_Chr7g0199631

cucumisin-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
17692484 .. 17692794
311 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 177 bp
ATGTCCTGCCCTCATGCTAGTGGTGCTGCAGCTTATGTCAAAGCTGCACATCCAAATTGGTCTCCTGCTGCAATCAAATCTGCACTCATGACAACAGGTGTGAACAAACGGTACTCTTGCTTTCATTATAATAAGACGGGAACTGACTATAGCTGGGTGCATTTTTCCCCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.35

Weight (kDa)

9.1

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 1 - 33 2.6e-08 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AfaI GTAC 1 cut(s) 113
AluBI AGCT 3 cut(s) 32, 44, 153
AluI AGCT 3 cut(s) 32, 44, 153
Alw26I GTCTC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 26, 29, 44, 68
BbvI GCAGC 4 cut(s) 13, 31, 41, 55
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 27, 148
BisI GCNGC 4 cut(s) 27, 30, 45, 69
BlsI GCNGC 4 cut(s) 28, 31, 46, 70
BsaI GGTCTC 1 cut(s) 66
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 4 cut(s) 13, 31, 41, 55
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 2 cut(s) 30, 66
BsmAI GTCTC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 66
BspHI TCATGA 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 111
BstF5I GGATG 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSFI CTRYAG 2 cut(s) 27, 148
BstV1I GCAGC 4 cut(s) 13, 31, 41, 55
BtsCI GGATG 1 cut(s) 49
CciI TCATGA 1 cut(s) 87
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 14, 88
CviJI RGCY 3 cut(s) 32, 44, 153
CviKI_1 RGCY 3 cut(s) 32, 44, 153
CviQI GTAC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 17, 91
FaiI YATR 5 cut(s) 15, 36, 89, 129, 150
FatI CATG 2 cut(s) 13, 87
Fnu4HI GCNGC 4 cut(s) 27, 30, 45, 69
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 27, 30, 45, 69
FspBI CTAG 1 cut(s) 18
GluI GCNGC 4 cut(s) 27, 30, 45, 69
GsaI CCCAGC 1 cut(s) 157
Hin1II CATG 2 cut(s) 17, 91
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 29, 47, 71, 83, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 17, 91
LpnPI CCDG 4 cut(s) 19, 78, 81, 139
Lsp1109I GCAGC 4 cut(s) 13, 31, 41, 55
MaeI CTAG 1 cut(s) 18
MluCI AATT 1 cut(s) 55
MnlI CCTC 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 17, 91
PagI TCATGA 1 cut(s) 87
PkrI GCNGC 4 cut(s) 28, 31, 46, 70
PsiI TTATAA 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 18
SatI GCNGC 4 cut(s) 27, 30, 45, 69
SetI ASST 4 cut(s) 34, 46, 100, 155
SfcI CTRYAG 2 cut(s) 27, 148
SgeI CNNG 9 cut(s) 18, 26, 30, 77, 100, 108, 129, 150, 166
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 111
TasI AATT 1 cut(s) 55
TseI GCWGC 4 cut(s) 26, 29, 44, 68
TspDTI ATGAA 1 cut(s) 113
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.