RchiOBHm_Chr7g0200811

Belongs to the eukaryotic ribosomal protein eS26 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
18529457 .. 18531551
2095 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGCTTGATGCAGCTGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTCCAGGAGGCTTATGTTTATGAAGCCTACACTCTTCCTAAGCTGTATGCAAAGATGCAGTACTCTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTTGA

Protein Analysis

57

Amino Acids

6.53

Weight (kDa)

8.89

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 6 - 57 7.6e-23 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 1 cut(s) 131
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 14, 56, 112
AluI AGCT 3 cut(s) 14, 56, 112
ApeKI GCWGC 3 cut(s) 11, 14, 56
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 2 cut(s) 23, 43
BciT130I CCWGG 1 cut(s) 74
BisI GCNGC 3 cut(s) 12, 15, 57
BlsI GCNGC 3 cut(s) 13, 16, 58
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 23, 43
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 73
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 23, 43
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 5 cut(s) 14, 56, 80, 95, 112
CviKI_1 RGCY 5 cut(s) 14, 56, 80, 95, 112
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 108
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 72
FaiI YATR 3 cut(s) 84, 90, 117
Fnu4HI GCNGC 3 cut(s) 12, 15, 57
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 12, 15, 57
GluI GCNGC 3 cut(s) 12, 15, 57
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 11, 119, 127
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 159
LpnPI CCDG 4 cut(s) 17, 59, 86, 154
Lsp1109I GCAGC 2 cut(s) 23, 43
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 159
MboII GAAGA 1 cut(s) 95
MnlI CCTC 4 cut(s) 18, 30, 70, 159
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 13, 16, 58
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 3 cut(s) 12, 15, 57
ScaI AGTACT 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 74
SetI ASST 5 cut(s) 16, 29, 58, 114, 162
SfaNI GCATC 1 cut(s) 114
SgeI CNNG 8 cut(s) 17, 34, 44, 65, 85, 86, 153, 170
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 1 cut(s) 162
TatI WGTACW 1 cut(s) 129
TseI GCWGC 3 cut(s) 11, 14, 56
TspDTI ATGAA 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.