RchiOBHm_Chr7g0202851

50S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
20532695 .. 20532949
255 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGGCGATACATTTATACATAACTTCTACACCTAGCATTCACAATGGAGCCGTAGATGGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAACATTGTTGTGGTAAATGTCGTAATCCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCATCTCTACTGTAAAATCAATTTTCGACGGAATGAAAAAGACATATATGGTAGAATTGTAACTATAGAATACGACCCTAATTAA

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

9.59

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L2_N PF00181 28 - 84 1.5e-14 Ribosomal Proteins L2, RNA binding N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 35
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 49
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 182
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 234
CviJI RGCY 1 cut(s) 50
CviKI_1 RGCY 1 cut(s) 50
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
FaiI YATR 9 cut(s) 16, 20, 96, 153, 168, 215, 217, 219, 236
FspBI CTAG 1 cut(s) 33
HinfI GANTC 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 182
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 132, 142
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MluCI AATT 4 cut(s) 85, 190, 225, 250
MnlI CCTC 3 cut(s) 125, 149, 155
MseI TTAA 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 36
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 49
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 253
Sau3AI GATC 1 cut(s) 90
SetI ASST 2 cut(s) 34, 166
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 234
SgeI CNNG 5 cut(s) 45, 74, 90, 141, 159
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 4 cut(s) 85, 190, 225, 250
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 85, 190, 225, 250
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 214
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.