RchiOBHm_Chr7g0203121

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
20794373 .. 20795094
722 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGCATCTCCTACTCCTTTGTTTCTAATACTCTGTTTCACTTGCTTCTCTGTCTCATTTTCCCAAACACTCTTCCTCCCCCTAACCCACTCCCTCTCCCAAACCCAATTCAACACCACCCACCACCTCCTCAAAGCCACTGCCACGCGCTCCGCCACCCGCTTCCACCGCCACCAACACCACCGCAAAACCAACCAAGTCTCTCTCCCACTCGCTCCGGGAAGCGACTACACTCTCTCCTTCACTCTCGGCTCCACCCCTCCCCAGCCCATCTCCCTCTACATGGACACCGGCAGCGACCTTGTCTGGTTTCCCTGCTCTCCCTTCGAGTGCATTCTCTGCGAAGGCAAGCCCAACTCCTCCTTCCCCCGCCCAAAATCCCCAAAAACGCCGCCGTTTCCTGCGACTCCCACTCCTGCTCCGCCGCGCACTCCGCCCTTAGTTCCCGCTCTCTCTGCGCCATAG

Protein Analysis

154

Amino Acids

16.88

Weight (kDa)

9.4

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 77 - 132 1.2e-07 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 449
AccII CGCG 2 cut(s) 148, 427
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
Alw26I GTCTC 2 cut(s) 58, 205
ApeKI GCWGC 1 cut(s) 294
AspLEI GCGC 3 cut(s) 150, 429, 460
AsuC2I CCSGG 1 cut(s) 219
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 379
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 58, 205
BisI GCNGC 3 cut(s) 295, 392, 425
BlsI GCNGC 3 cut(s) 296, 393, 426
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 119, 349
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 148, 427
BsiSI CCGG 2 cut(s) 218, 291
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 58, 205
BsmI GAATGC 1 cut(s) 333
BspFNI CGCG 2 cut(s) 148, 427
BspLI GGNNCC 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 439
BstFNI CGCG 2 cut(s) 148, 427
BstHHI GCGC 3 cut(s) 150, 429, 460
BstMAI GTCTC 2 cut(s) 58, 205
BstMWI GCNNNNNNNGC 4 cut(s) 168, 339, 433, 455
BstSCI CCNGG 1 cut(s) 217
BstUI CGCG 2 cut(s) 148, 427
BstV1I GCAGC 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 3 cut(s) 150, 429, 460
Cfr10I RCCGGY 1 cut(s) 290
CviAII CATG 1 cut(s) 283
CviJI RGCY 4 cut(s) 137, 252, 268, 352
CviKI_1 RGCY 4 cut(s) 137, 252, 268, 352
DdeI CTNAG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 3 cut(s) 142, 411, 423
FaeI CATG 1 cut(s) 286
FaiI YATR 2 cut(s) 284, 463
FatI CATG 1 cut(s) 282
FauI CCCGC 3 cut(s) 167, 377, 454
Fnu4HI GCNGC 3 cut(s) 295, 392, 425
Fsp4HI GCNGC 3 cut(s) 295, 392, 425
GlaI GCGC 3 cut(s) 149, 428, 459
GluI GCNGC 3 cut(s) 295, 392, 425
GsaI CCCAGC 1 cut(s) 268
HapII CCGG 2 cut(s) 218, 291
HhaI GCGC 3 cut(s) 150, 429, 460
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 3 cut(s) 148, 427, 458
HinP1I GCGC 3 cut(s) 148, 427, 458
HinfI GANTC 1 cut(s) 406
HpaII CCGG 2 cut(s) 218, 291
HpyAV CCTTC 4 cut(s) 250, 334, 338, 373
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 339, 433, 455
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 3 cut(s) 148, 427, 458
LmnI GCTCC 4 cut(s) 155, 220, 257, 424
LpnPI CCDG 7 cut(s) 231, 278, 292, 304, 328, 414, 429
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 449
MboII GAAGA 1 cut(s) 64
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 7 cut(s) 86, 104, 137, 140, 270, 287, 370
MspI CCGG 2 cut(s) 218, 291
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 333
MvnI CGCG 2 cut(s) 148, 427
MwoI GCNNNNNNNGC 4 cut(s) 168, 339, 433, 455
NciI CCSGG 1 cut(s) 219
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 228
PctI GAATGC 1 cut(s) 333
PflFI GACNNNGTC 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 3 cut(s) 296, 393, 426
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 302
SatI GCNGC 3 cut(s) 295, 392, 425
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 219
SetI ASST 2 cut(s) 129, 303
SfaNI GCATC 1 cut(s) 14
Sse9I AATT 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 107
TauI GCSGC 2 cut(s) 394, 427
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 294
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.