RchiOBHm_Chr7g0203961

ORMDL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030490
Physical Location & Seq
Reverse (-)
21540196 .. 21541590
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 165 bp
ATGGCGAGCCTGTATGTGAAAGCTGTGCCTCCTGCGGATCTGAATAGGAACACAGAGTGGTTCGTGTACCTGGCGTTTGGACCACCTATTTTCTCATCCTCTTCTTCTCTTGGCTCCTTGTGCTCTCGATTTTTGGCTGCTCTCCTGGCGTGGCTTAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ORMDL

Protein Analysis

54

Amino Acids

5.93

Weight (kDa)

9.18

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030490)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203951 RchiOBHm_Chr7g0203961

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 1 cut(s) 68
AjnI CCWGG 2 cut(s) 69, 144
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 71, 146
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 71, 146
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 71, 146
BseBI CCWGG 2 cut(s) 71, 146
BseGI GGATG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 1 cut(s) 45
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 71, 146
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 120, 146
BstNI CCWGG 2 cut(s) 71, 146
BstSCI CCNGG 2 cut(s) 69, 144
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 5 cut(s) 9, 23, 114, 137, 154
CviKI_1 RGCY 5 cut(s) 9, 23, 114, 137, 154
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraIII CACNNNGTG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 69, 144
FaiI YATR 2 cut(s) 15, 163
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 146
HpyF3I CTNAG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 6 cut(s) 23, 45, 56, 83, 131, 158
Lsp1109I GCAGC 1 cut(s) 124
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 93, 96
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 125
MnlI CCTC 2 cut(s) 39, 109
MspR9I CCNGG 2 cut(s) 71, 146
MvaI CCWGG 2 cut(s) 71, 146
MwoI GCNNNNNNNGC 2 cut(s) 120, 146
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 69, 144
PspGI CCWGG 2 cut(s) 69, 144
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 71, 146
SduI GDGCHC 1 cut(s) 125
SetI ASST 3 cut(s) 25, 72, 88
SinI GGWCC 1 cut(s) 80
SsiI CCGC 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 69, 144
TaqI TCGA 1 cut(s) 127
TseI GCWGC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.