Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030491

Physical Location & Seq

Genomic Coordinates Forward (+)

22846093 .. 22846821

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAGGTCGACGAGAGACAGTTTTTTCGTAGCATCGTCTATCAATTTCCTGGAACAGAACCCCTGCCCTCCGACCATGCGACGGACGTGGTTCCGATCATATTTACGCTGTCGAATGACTTCGAAAGGTTTATTATAAAACATACCGGTCAGCCATTACAAGATCTACCTTCCCAGGAAGAAACAACCCGCATAAAAGAGGAAGTCATTAGGGTTTCTCTGTCCAGCCTCAAGCTTTCATCTAGGAGACTTGAGCATAGAGAGACCTTGATTGAGATTGTTTCCCGAATATACGATCATATCTTAGAAGATAGGATTCGAGCTATTGTTGATAAGATTTTTGAGGTGGTTGATGATAAACTGACAGTCCCCTTGCAGCCTATCAATGTGTGGGGATCGAACGTGAATTTGAGTTTGTACTGTTCTAGGCCTCTAACTGTTCCAGTCGATACCATTCACCTGCCATTTATTCCTCCTCCTGCATTTAAAACATCACCGGATTTCGAATCATCGAATTTGAAGAAAGTGAAACTTGATAGTTTGGAAGCTGCAGAGAAATCATGTGTTATTTGCATCGAGGACTTCGAGGCCGGCGTCCAAGTTGTCCGCTTGCATTGTTCGCACCTTTACCATGAACGATGCATCGATCGGTGGCTCAAGAAGCCTAGTCATATATGTCCCATATGTCGATCTCCGATCTTGAACATTACTTTAGGCCGCAGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

242

Amino Acids

27.89

Weight (kDa)

6.51

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	183 - 230	9.4e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	187 - 230	9.6e-13	Ring finger domain
zf-RING_11	PF17123	188 - 215	1.2e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	188 - 229	7.7e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030491)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205181
rosa_multiflora	Rmu_sc0009349.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AarI	CACCTGC	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	468
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	3 cut(s)	190, 607, 718
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	406, 514
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	520, 703
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	49, 174
AluBI	AGCT	3 cut(s)	235, 323, 548
AluI	AGCT	3 cut(s)	235, 323, 548
Alw26I	GTCTC	3 cut(s)	10, 241, 257
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	3 cut(s)	428, 588, 715
ApeKI	GCWGC	2 cut(s)	376, 548
ApoI	RAATTY	2 cut(s)	406, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AsiGI	ACCGGT	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	449, 486
AsuII	TTCGAA	2 cut(s)	123, 504
BbvI	GCAGC	2 cut(s)	388, 535
BciT130I	CCWGG	2 cut(s)	51, 176
BcoDI	GTCTC	3 cut(s)	10, 241, 257
BfaI	CTAG	3 cut(s)	243, 426, 666
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	468
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	3 cut(s)	377, 549, 718
BlsI	GCNGC	3 cut(s)	378, 550, 719
Bme1390I	CCNGG	2 cut(s)	51, 176
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	51, 176
BmsI	GCATC	4 cut(s)	42, 582, 629, 651
Bpu14I	TTCGAA	2 cut(s)	123, 504
BpuEI	CTTGAG	3 cut(s)	215, 272, 641
Bsa29I	ATCGAT	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	146, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	2 cut(s)	146, 590
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	51, 176
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	388, 535
Bsh1285I	CGRYCG	1 cut(s)	649
BshFI	GGCC	3 cut(s)	430, 590, 717
BshTI	ACCGGT	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	645
BsiEI	CGRYCG	1 cut(s)	649
BsiSI	CCGG	3 cut(s)	147, 497, 591
BslFI	GGGAC	2 cut(s)	353, 663
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	10, 241, 257
BsmFI	GGGAC	2 cut(s)	353, 663
BsnI	GGCC	3 cut(s)	430, 590, 717
Bso31I	GGTCTC	1 cut(s)	257
Bsp119I	TTCGAA	2 cut(s)	123, 504
Bsp143I	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
BspACI	CCGC	3 cut(s)	190, 607, 718
BspANI	GGCC	3 cut(s)	430, 590, 717
BspDI	ATCGAT	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	403
BspT104I	TTCGAA	2 cut(s)	123, 504
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	146, 590
BsrI	ACTGG	1 cut(s)	443
BssAI	RCCGGY	2 cut(s)	146, 590
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
BssNI	GRCGYC	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	51, 176
Bst4CI	ACNGT	4 cut(s)	21, 367, 422, 439
BstACI	GRCGYC	1 cut(s)	594
BstBI	TTCGAA	2 cut(s)	123, 504
BstC8I	GCNNGC	2 cut(s)	592, 611
BstDEI	CTNAG	1 cut(s)	304
BstKTI	GATC	7 cut(s)	99, 166, 298, 398, 649, 692, 699
BstMAI	GTCTC	3 cut(s)	10, 241, 257
BstMBI	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	619, 661
BstNI	CCWGG	2 cut(s)	51, 176
BstSCI	CCNGG	2 cut(s)	49, 174
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	388, 535
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	430, 590, 717
BsuTUI	ATCGAT	1 cut(s)	645
BtrI	CACGTC	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	592, 611
Cfr10I	RCCGGY	2 cut(s)	146, 590
ClaI	ATCGAT	1 cut(s)	645
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	418
CspAI	ACCGGT	1 cut(s)	146
CviAII	CATG	3 cut(s)	77, 561, 632
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	7 cut(s)	98, 165, 297, 397, 648, 691, 698
DpnII	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
DraI	TTTAAA	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	49, 174
EcoT22I	ATGCAT	1 cut(s)	644
FaeI	CATG	3 cut(s)	80, 564, 635
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	2 cut(s)	353, 663
FatI	CATG	3 cut(s)	76, 560, 631
FauI	CCCGC	1 cut(s)	197
FauNDI	CATATG	1 cut(s)	683
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	377, 549, 718
Fsp4HI	GCNGC	3 cut(s)	377, 549, 718
FspBI	CTAG	3 cut(s)	243, 426, 666
GluI	GCNGC	3 cut(s)	377, 549, 718
HaeIII	GGCC	3 cut(s)	430, 590, 717
HapII	CCGG	3 cut(s)	147, 497, 591
HgaI	GACGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	3 cut(s)	80, 564, 635
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	316, 506
HpaII	CCGG	3 cut(s)	147, 497, 591
HphI	GGTGA	2 cut(s)	449, 486
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	73, 96, 696
Hpy188III	TCNNGA	3 cut(s)	285, 658, 700
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	14, 85
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	4 cut(s)	21, 367, 422, 439
HpyCH4IV	ACGT	2 cut(s)	87, 402
HpyCH4V	TGCA	6 cut(s)	376, 482, 551, 573, 613, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	619, 661
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	2 cut(s)	87, 402
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	80, 564, 635
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
Kzo9I	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
Lsp1109I	GCAGC	2 cut(s)	388, 535
LweI	GCATC	4 cut(s)	42, 582, 629, 651
MaeI	CTAG	3 cut(s)	243, 426, 666
MaeII	ACGT	2 cut(s)	87, 402
MalI	GATC	7 cut(s)	98, 165, 297, 397, 648, 691, 698
MboI	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
MboII	GAAGA	3 cut(s)	191, 320, 532
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	3 cut(s)	44, 406, 514
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	9 cut(s)	79, 193, 239, 337, 441, 483, 486, 571, 580
Mph1103I	ATGCAT	1 cut(s)	644
MroNI	GCCGGC	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	486
MspI	CCGG	3 cut(s)	147, 497, 591
MspR9I	CCNGG	2 cut(s)	51, 176
MvaI	CCWGG	2 cut(s)	51, 176
MwoI	GCNNNNNNNGC	2 cut(s)	619, 661
NaeI	GCCGGC	1 cut(s)	592
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	80, 564, 635
NlaIV	GGNNCC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	644
NspV	TTCGAA	2 cut(s)	123, 504
PaqCI	CACCTGC	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	2 cut(s)	582, 591
PdiI	GCCGGC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	316, 506
PfoI	TCCNGGA	1 cut(s)	49
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	378, 550, 719
Ple19I	CGATCG	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	49, 174
PspGI	CCWGG	2 cut(s)	49, 174
PspN4I	GGNNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	3 cut(s)	377, 549, 718
Sau3AI	GATC	7 cut(s)	96, 163, 295, 395, 646, 689, 696
ScrFI	CCNGG	2 cut(s)	51, 176
SfaNI	GCATC	4 cut(s)	42, 582, 629, 651
SfcI	CTRYAG	1 cut(s)	549
SfuI	TTCGAA	2 cut(s)	123, 504
SmlI	CTYRAG	3 cut(s)	230, 251, 656
SmoI	CTYRAG	3 cut(s)	230, 251, 656
Sse9I	AATT	3 cut(s)	44, 406, 514
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	3 cut(s)	190, 607, 718
SspMI	CTAG	3 cut(s)	243, 426, 666
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	2 cut(s)	49, 174
TaaI	ACNGT	4 cut(s)	21, 367, 422, 439
TaiI	ACGT	2 cut(s)	90, 405
TasI	AATT	3 cut(s)	44, 406, 514
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	316, 506
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseI	GCWGC	2 cut(s)	376, 548
TspDTI	ATGAA	3 cut(s)	17, 228, 648
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	2 cut(s)	406, 514
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	3 cut(s)	243, 426, 666
Zsp2I	ATGCAT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.