RchiOBHm_Chr7g0206061

Belongs to the universal ribosomal protein uL22 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
23729020 .. 23729334
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGCAGTTTATTCTAAGCATTGGCTTTGGCCTAGCAAGCATAGTTCCAGTAGCATTCCATTTACTCGCTTTTATCATGAAGTAGGACGAATTGCTCAGGCCAAGAATCGCCATTCAAATGGACAGGGACGGTGGCCTATTAAATCTGCCAAATTCATTCTGGACTGGCTTAAGAATGCTGAGAGTAATGCAGAGGTATGCTTTACTTCAATGTGGTCTTTAGTTACTACAAATTCTCCTATGTACACTCATATATATGCTTTTTCAACCCATCCTCTAGGTGAAAGGTGCTCTTCATACCTCATATTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.11

Weight (kDa)

9.8

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 152, 232
AfaI GTAC 1 cut(s) 245
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 117, 210, 267
Alw21I GWGCWC 1 cut(s) 293
AoxI GGCC 3 cut(s) 29, 99, 134
ApoI RAATTY 2 cut(s) 152, 232
AsuHPI GGTGA 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 293
BccI CCATC 1 cut(s) 279
BfaI CTAG 2 cut(s) 33, 278
BfrI CTTAAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bse1I ACTGG 2 cut(s) 48, 170
BseGI GGATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 110, 171
BseNI ACTGG 2 cut(s) 48, 170
BshFI GGCC 3 cut(s) 31, 101, 136
BsiHKAI GWGCWC 1 cut(s) 293
BslFI GGGAC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 2 cut(s) 54, 181
BsnI GGCC 3 cut(s) 31, 101, 136
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 243
BspANI GGCC 3 cut(s) 31, 101, 136
BspCNI CTCAG 2 cut(s) 109, 172
BspHI TCATGA 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 298
BspTI CTTAAG 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 48, 170
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 298
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 15, 96, 180
BstF5I GGATG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 119
BsuRI GGCC 3 cut(s) 31, 101, 136
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 76
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 25, 31, 101, 136, 169
CviKI_1 RGCY 5 cut(s) 25, 31, 101, 136, 169
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 15, 96, 180
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
FaeI CATG 1 cut(s) 80
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 76
FokI GGATG 1 cut(s) 258
FspBI CTAG 2 cut(s) 33, 278
HaeIII GGCC 3 cut(s) 31, 101, 136
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 77, 161
Hpy8I GTNNAC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 3 cut(s) 15, 96, 180
Hsp92II CATG 1 cut(s) 80
LguI GCTCTTC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 61, 83, 110, 146, 151, 295
MaeI CTAG 2 cut(s) 33, 278
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 90, 152, 232
MnlI CCTC 3 cut(s) 187, 285, 311
MseI TTAA 2 cut(s) 141, 171
MslI CAYNNNNRTG 2 cut(s) 117, 255
MspCI CTTAAG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 54, 181
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 80
PagI TCATGA 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 298
PctI GAATGC 2 cut(s) 54, 181
PfeI GAWTC 1 cut(s) 106
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 117, 255
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 141, 171
SduI GDGCHC 1 cut(s) 293
SetI ASST 5 cut(s) 198, 283, 290, 303, 314
SmiMI CAYNNNNRTG 2 cut(s) 117, 255
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 90, 152, 232
SspMI CTAG 2 cut(s) 33, 278
TaaI ACNGT 1 cut(s) 132
TasI AATT 3 cut(s) 90, 152, 232
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 141, 171
Tru9I TTAA 2 cut(s) 141, 171
TspDTI ATGAA 3 cut(s) 93, 145, 285
Vha464I CTTAAG 1 cut(s) 170
XapI RAATTY 2 cut(s) 152, 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 2 cut(s) 33, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.