Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24716849 .. 24718190

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTATATATATATGATCTTCATCTTGTGTTAATTATTTGTGCAACTTCATGTGTAGTTTATTTTCCGCTTACAAGCTCTACCACTGATGATCTCCCGAGGGAGTTGCTTCACGCACTCCCAAATATAGCTGATAGTAGCAATAACAACGACTCCAAGAAGGTGCCTGTGTATGTGATGCTTCCACTAGACACAGTGACGCATGGAGGGCATTTGAACAAGCCAAGAGCAATGAATGCGAGTTTGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGGTCGAGAAAGACGGACCTTCCAAGTACAACTGGGAAGGAACCCTGACCTTGTACGTGAACACAGACAAATCTGGTAGGAGGAATCATGAGTACATCTCCTTGGGCTGTGATTCATTGCCTGTTCTCGGAGGAAGAACGCCCATCCAGGTTTACAGCGACTACATGAAGAGCTTCCATGATAGATTCAGAGATTACTTGGGAAACGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTTAGATATCCTGCTTATCCAGAGAGCAATGGAACCTGGAAGTTTCCTGGAATTGGAGAATTTCAATGCTATGACAAGTACATGAAGGCTTCCTTGGAAGCTTCAGCGGAGGCACAAGGAAAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

223

Amino Acids

24.91

Weight (kDa)

5.67

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	58 - 117	3.5e-25	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	121 - 217	2.1e-45	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	2 cut(s)	68, 647
AcsI	RAATTY	2 cut(s)	510, 599
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	4 cut(s)	329, 356, 395, 620
AfiI	CCNNNNNNNGG	2 cut(s)	428, 593
AgsI	TTSAA	4 cut(s)	217, 256, 515, 605
AjnI	CCWGG	3 cut(s)	447, 575, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	4 cut(s)	78, 131, 474, 641
AluI	AGCT	4 cut(s)	78, 131, 474, 641
Ama87I	CYCGRG	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	510, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	317, 527
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	317, 527
BanI	GGYRCC	1 cut(s)	163
BccI	CCATC	2 cut(s)	241, 452
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	3 cut(s)	449, 577, 588
BfaI	CTAG	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	449, 577, 588
Bme18I	GGWCC	2 cut(s)	317, 527
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	317, 527
BmiI	GGNNCC	4 cut(s)	165, 343, 528, 574
BmrFI	CCNGG	3 cut(s)	449, 577, 588
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	168, 277
BmuI	ACTGGG	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BsaAI	YACGTR	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	98, 402, 633
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 593
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	3 cut(s)	237, 416, 574
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	449, 577, 588
BseDI	CCNNGG	3 cut(s)	98, 402, 633
BseGI	GGATG	2 cut(s)	292, 444
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	428, 593
BseMI	GCAATG	3 cut(s)	237, 416, 574
BseNI	ACTGG	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	428, 593
BsmI	GAATGC	2 cut(s)	241, 265
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	16, 91
BspACI	CCGC	2 cut(s)	68, 647
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	4 cut(s)	165, 343, 528, 574
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	237, 416, 574
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	98, 402, 633
BssMI	GATC	2 cut(s)	16, 91
BssT1I	CCWWGG	2 cut(s)	402, 633
Bst2UI	CCWGG	3 cut(s)	449, 577, 588
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	292, 444
BstKTI	GATC	2 cut(s)	19, 94
BstMBI	GATC	2 cut(s)	16, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 236
BstNI	CCWGG	3 cut(s)	449, 577, 588
BstSCI	CCNGG	3 cut(s)	447, 575, 586
BtsCI	GGATG	2 cut(s)	292, 444
BtsIMutI	CAGTG	2 cut(s)	84, 201
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	317, 527
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	328, 355, 394, 619
CviAII	CATG	6 cut(s)	51, 203, 389, 466, 479, 622
CviJI	RGCY	8 cut(s)	78, 131, 223, 251, 408, 474, 629, 641
CviKI_1	RGCY	8 cut(s)	78, 131, 223, 251, 408, 474, 629, 641
CviQI	GTAC	4 cut(s)	328, 355, 394, 619
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	2 cut(s)	18, 93
DpnII	GATC	2 cut(s)	16, 91
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	402, 633
Eco32I	GATATC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	317, 527
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	3 cut(s)	447, 575, 586
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	402, 633
ErhI	CCWWGG	2 cut(s)	402, 633
FaeI	CATG	6 cut(s)	54, 206, 392, 469, 482, 625
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	6 cut(s)	50, 202, 388, 465, 478, 621
FokI	GGATG	2 cut(s)	299, 431
FspBI	CTAG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	6 cut(s)	54, 206, 392, 469, 482, 625
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	4 cut(s)	152, 385, 413, 486
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	361, 454, 539
Hpy188I	TCNGA	2 cut(s)	431, 491
Hpy188III	TCNNGA	4 cut(s)	97, 307, 389, 560
Hpy8I	GTNNAC	3 cut(s)	361, 454, 539
HpyAV	CCTTC	5 cut(s)	154, 266, 330, 332, 619
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	44, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 236
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	54, 206, 392, 469, 482, 625
Kzo9I	GATC	2 cut(s)	16, 91
LguI	GCTCTTC	1 cut(s)	464
LweI	GCATC	2 cut(s)	168, 277
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	18, 93
MboI	GATC	2 cut(s)	16, 91
MboII	GAAGA	4 cut(s)	11, 268, 447, 481
MluCI	AATT	4 cut(s)	33, 510, 591, 599
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	93, 200, 375, 425, 643
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	647
MspR9I	CCNGG	3 cut(s)	449, 577, 588
Mva1269I	GAATGC	2 cut(s)	241, 265
MvaI	CCWGG	3 cut(s)	449, 577, 588
MwoI	GCNNNNNNNGC	2 cut(s)	208, 236
NdeII	GATC	2 cut(s)	16, 91
NlaIII	CATG	6 cut(s)	54, 206, 392, 469, 482, 625
NlaIV	GGNNCC	4 cut(s)	165, 343, 528, 574
NmuCI	GTSAC	1 cut(s)	196
PagI	TCATGA	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	464
PctI	GAATGC	2 cut(s)	241, 265
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	385, 413, 486
PfoI	TCCNGGA	1 cut(s)	586
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	447, 575, 586
PspGI	CCWGG	3 cut(s)	447, 575, 586
PspN4I	GGNNCC	4 cut(s)	165, 343, 528, 574
PspPI	GGNCC	2 cut(s)	317, 527
PspPPI	RGGWCCY	1 cut(s)	527
RsaI	GTAC	4 cut(s)	329, 356, 395, 620
RsaNI	GTAC	4 cut(s)	328, 355, 394, 619
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	16, 91
Sau96I	GGNCC	2 cut(s)	317, 527
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	449, 577, 588
SfaNI	GCATC	2 cut(s)	168, 277
SinI	GGWCC	2 cut(s)	317, 527
Sse9I	AATT	4 cut(s)	33, 510, 591, 599
SsiI	CCGC	2 cut(s)	68, 647
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	3 cut(s)	447, 575, 586
StyI	CCWWGG	2 cut(s)	402, 633
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	306
TasI	AATT	4 cut(s)	33, 510, 591, 599
TatI	WGTACW	3 cut(s)	327, 393, 618
TfiI	GAWTC	3 cut(s)	385, 413, 486
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	91, 201
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	11, 39, 248, 405, 482, 638
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	91, 201
VpaK11BI	GGWCC	2 cut(s)	317, 527
XapI	RAATTY	2 cut(s)	510, 599
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.