RchiOBHm_Chr7g0208121

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
25509193 .. 25509998
806 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 126 bp
ATGGCCCTCAAAGACCGGGTTTCAGCCAACTCAAATAAGCTGCTTGGTCATAAAATCGGCCAAAAGTGGGGCTCTGACCTCCCTTTCTTGTTTAAGGCTCTTTGTGGCTTTAATTATCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

41

Amino Acids

4.59

Weight (kDa)

9.75

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 67
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 2 cut(s) 3, 58
ApeKI GCWGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 17
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 2 cut(s) 5, 60
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 2 cut(s) 5, 60
Bsp1286I GDGCHC 1 cut(s) 74
BspANI GGCC 2 cut(s) 5, 60
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 5, 60
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 7 cut(s) 5, 26, 40, 60, 72, 98, 108
CviKI_1 RGCY 7 cut(s) 5, 26, 40, 60, 72, 98, 108
EaeI YGGCCR 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 74
FaiI YATR 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 5, 60
HapII CCGG 1 cut(s) 16
HpaII CCGG 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 123
LpnPI CCDG 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 1 cut(s) 112
MnlI CCTC 2 cut(s) 17, 89
MseI TTAA 2 cut(s) 93, 111
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 17
NciI CCSGG 1 cut(s) 17
PkrI GCNGC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 93, 111
SatI GCNGC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 74
SetI ASST 2 cut(s) 42, 81
SgeI CNNG 4 cut(s) 28, 29, 56, 100
Sse9I AATT 1 cut(s) 112
StyD4I CCNGG 1 cut(s) 15
TasI AATT 1 cut(s) 112
Tru1I TTAA 2 cut(s) 93, 111
Tru9I TTAA 2 cut(s) 93, 111
TseI GCWGC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.