RchiOBHm_Chr7g0209331

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
26685249 .. 26685557
309 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGAAATTACAAAAGGACAAGTTCAAAGCAGTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACAATTGGTACTACAGCTTGCCAGTTTTTCAGTTACAGACTCTATAACTTCAATGCAACCGGAAAATGGTGGTGTCACCTACCATTAGTCCTTCATTCATTTCTCAACTACAGTCACTTTGCCCACAAAACGGTGATGGAGCCAAGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.59

Weight (kDa)

9.34

Isoelectric Point (pI)

16.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 5 - 44 1.3e-11 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 141, 205
AgsI TTSAA 2 cut(s) 25, 127
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 143, 220
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 87, 184
BglII AGATCT 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 205
Bse1I ACTGG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 141, 205
BseNI ACTGG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 141, 205
BsmAI GTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 97
BssMI GATC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 188, 208
BstC8I GCNNGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 49
BstSFI CTRYAG 2 cut(s) 87, 184
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 2 cut(s) 92, 217
CviKI_1 RGCY 2 cut(s) 92, 217
CviQI GTAC 1 cut(s) 84
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 41
FaiI YATR 1 cut(s) 120
HapII CCGG 1 cut(s) 135
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 143, 220
Hpy166II GTNNAC 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 188, 208
HpyCH4V TGCA 1 cut(s) 131
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 110, 148
MaeIII GTNAC 4 cut(s) 55, 107, 149, 188
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 49
MluCI AATT 2 cut(s) 5, 78
MlyI GAGTC 1 cut(s) 108
MspI CCGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 78
NdeII GATC 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 3 cut(s) 55, 149, 188
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 108
SetI ASST 2 cut(s) 94, 156
SfcI CTRYAG 2 cut(s) 87, 184
SgeI CNNG 7 cut(s) 31, 59, 65, 74, 105, 109, 147
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 2 cut(s) 5, 78
TaaI ACNGT 2 cut(s) 188, 208
TasI AATT 2 cut(s) 5, 78
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 3 cut(s) 55, 149, 188
Tsp45I GTSAC 3 cut(s) 55, 149, 188
TspDTI ATGAA 3 cut(s) 17, 158, 162
TspRI CASTG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.