RchiOBHm_Chr7g0210731

Auxin-induced protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
28162672 .. 28163474
803 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 165 bp
ATGAAGAGATTTGTAATCCCAGTATCATATTTGAACCGACCTCTGTTCCTGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCAATGGGTGGTCTCACAATTCCTTGCAGCGAAGACACCTTCCTTGATCTCACTTCCCGCCTCAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.16

Weight (kDa)

4.5

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 1 - 51 5.3e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 101
AciI CCGC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 110
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 88, 139
BspACI CCGC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 20
BssMI GATC 2 cut(s) 88, 139
Bst2UI CCWGG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 59, 155
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 91, 142
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 88, 139
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 132
BsuI GTATCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 163
CviJI RGCY 1 cut(s) 68
CviKI_1 RGCY 1 cut(s) 68
DdeI CTNAG 2 cut(s) 59, 155
DpnI GATC 2 cut(s) 90, 141
DpnII GATC 2 cut(s) 88, 139
Eco31I GGTCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 48
FaiI YATR 1 cut(s) 28
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 59, 155
Kzo9I GATC 2 cut(s) 88, 139
LpnPI CCDG 3 cut(s) 33, 35, 62
Lsp1109I GCAGC 1 cut(s) 132
MalI GATC 2 cut(s) 90, 141
MboI GATC 2 cut(s) 88, 139
MboII GAAGA 4 cut(s) 16, 83, 86, 137
MluCI AATT 2 cut(s) 77, 111
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 51, 164
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 2 cut(s) 88, 139
PflMI CCANNNNNTGG 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 88, 139
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 50
SetI ASST 3 cut(s) 43, 70, 134
SgeI CNNG 6 cut(s) 32, 61, 62, 77, 129, 149
Sse9I AATT 2 cut(s) 77, 111
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 48
TasI AATT 2 cut(s) 77, 111
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.