RchiOBHm_Chr7g0210941

auxin-induced protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
28297176 .. 28297418
243 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGGGTTTCCGGTTGCCTGGAATTCTTAACACTAAGCCTGCTTCAAAGACATCAGATATCCCCGAAGGTGCTTTTGCAGTCTCTGTTGGGGAGAGCAAGACGAAGCGATTCGTGATTCCAATGTCTTTTCTGAACCAGCCTTTATTCCTGGATTTGCTGAGTCAAGTTGAAGAAGAATTTGGATACAATCATCCAATGGGTGGCATCACAATTCCTTGTAGTGATCGAAGACAGCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.82

Weight (kDa)

6.54

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 13 - 74 1.8e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AcsI RAATTY 2 cut(s) 21, 176
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 45, 170
AjnI CCWGG 2 cut(s) 16, 147
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 83
ApoI RAATTY 2 cut(s) 21, 176
Asp700I GAANNNNTTC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 18, 149
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 18, 149
BmrFI CCNGG 2 cut(s) 18, 149
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 18, 149
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 150
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 18, 149
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 33, 158
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 223
BstNI CCWGG 2 cut(s) 18, 149
BstSCI CCNGG 2 cut(s) 16, 147
BstV2I GAAGAC 1 cut(s) 235
BsuI GTATCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 83
CviJI RGCY 3 cut(s) 37, 139, 235
CviKI_1 RGCY 3 cut(s) 37, 139, 235
DdeI CTNAG 2 cut(s) 33, 158
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 16, 147
EcoRV GATATC 1 cut(s) 58
FokI GGATG 1 cut(s) 177
HapII CCGG 1 cut(s) 10
HinfI GANTC 3 cut(s) 108, 115, 160
HpaII CCGG 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 55, 132
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 33, 158
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 3, 23, 30, 51, 134, 149, 161
LweI GCATC 1 cut(s) 213
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 182, 185, 240
MluCI AATT 3 cut(s) 21, 176, 210
MlyI GAGTC 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 18, 149
MvaI CCWGG 2 cut(s) 18, 149
NdeII GATC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 108, 115
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 147
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 16, 147
PspGI CCWGG 2 cut(s) 16, 147
PstNI CAGNNNCTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 18, 149
SetI ASST 2 cut(s) 70, 237
SfaNI GCATC 1 cut(s) 213
Sse9I AATT 3 cut(s) 21, 176, 210
StyD4I CCNGG 2 cut(s) 16, 147
TaqI TCGA 1 cut(s) 226
TasI AATT 3 cut(s) 21, 176, 210
TfiI GAWTC 2 cut(s) 108, 115
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 2 cut(s) 21, 176
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.