RchiOBHm_Chr7g0212941

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
30115359 .. 30116263
905 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGTCGGGTGGCACACCAACTGGTGGATATATGAGGCAGAGGCATAGCCAGGGCTATGCGTCAAGTGGAGATGATCTTGAGGATGATGCATGCTTGATGTTTCATAGTTCGCCAGCTTCAAGTCCGAGAGTTTGGTCAAGCAGAGATTGCGGAGAATGTAATTTGGCTTGCCACAGCTGCAGGCATTGTATGCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.23

Weight (kDa)

5.99

Isoelectric Point (pI)

108.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AciI CCGC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 2 cut(s) 116, 177
AluI AGCT 2 cut(s) 116, 177
ApeKI GCWGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 50
BstAPI GCANNNNNTGC 2 cut(s) 147, 190
BstC8I GCNNGC 4 cut(s) 91, 114, 169, 182
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 147, 177, 190
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 4 cut(s) 91, 114, 169, 182
CseI GACGC 1 cut(s) 48
CviAII CATG 1 cut(s) 90
CviJI RGCY 5 cut(s) 48, 54, 116, 167, 177
CviKI_1 RGCY 5 cut(s) 48, 54, 116, 167, 177
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 1 cut(s) 93
FaiI YATR 7 cut(s) 30, 32, 45, 57, 91, 105, 191
FatI CATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HgaI GACGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 77
HpyCH4V TGCA 2 cut(s) 89, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 177, 190
Hsp92II CATG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 6, 35, 62, 126, 166
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 76
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MluCI AATT 1 cut(s) 160
MnlI CCTC 3 cut(s) 27, 33, 73
Mph1103I ATGCAT 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 147, 177, 190
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PstI CTGCAG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 177
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 50
SetI ASST 2 cut(s) 118, 179
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 93
Sse9I AATT 1 cut(s) 160
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 48
TasI AATT 1 cut(s) 160
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 23
XceI RCATGY 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.