RchiOBHm_Chr7g0213741

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
30847139 .. 30852901
5763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGGTGTGTTCCGATTTGATTGTTCTGCAAATGATAGAGAAGCAGCACATTCTAGTCTCTCTTTTGCGAATGGCAAGGATAGGGAGACACCGATTCAGAGTCAGAACATGCCGTCCTATATCCCAAATTTTGAACGTCTTCTTGGGCAGCAGATTGTTAAACTTGAGCTTCCTGTTGGTACCTCTTTATATTGGTACCTCTTTATACGGCACTGGGGAGGTTAGTGGGCAACTTGAGCGGACAGGAAAAAGAGTAAGCTATGGCTCTGGAACTACGTCATTGTACCAGTCACACCCTTGGGTGCTAGCTGTTCTTCCTTCTGGAGAGGCATTAGGAGTTCTTGCTGATACAACAAAGCGTTGTGAGGTACTGTATTTATGCCCCCAAAGTGGTCCTTGGGTTATCAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

137

Amino Acids

15.24

Weight (kDa)

9.69

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gal_mutarotas_2 PF13802 65 - 123 7.6e-07 Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 178, 194
AccB1I GGYRCC 2 cut(s) 178, 194
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 4 cut(s) 180, 196, 284, 369
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AloI GAACNNNNNNTCC 2 cut(s) 97, 129
AluBI AGCT 3 cut(s) 168, 258, 308
AluI AGCT 3 cut(s) 168, 258, 308
Alw26I GTCTC 2 cut(s) 61, 79
ApeKI GCWGC 2 cut(s) 43, 147
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 137
Asp718I GGTACC 2 cut(s) 178, 194
AspS9I GGNCC 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 2 cut(s) 178, 194
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 55, 159
BceAI ACGGC 2 cut(s) 96, 223
BcoDI GTCTC 2 cut(s) 61, 79
BfaI CTAG 2 cut(s) 53, 305
BisI GCNGC 2 cut(s) 44, 148
BlsI GCNGC 2 cut(s) 45, 149
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 180, 196
BmrI ACTGGG 1 cut(s) 222
BmtI GCTAGC 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 184, 254
BsaJI CCNNGG 2 cut(s) 296, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 217, 286
BseDI CCNNGG 2 cut(s) 296, 395
BseLI CCNNNNNNNGG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 217, 286
BseXI GCAGC 2 cut(s) 55, 159
BshNI GGYRCC 2 cut(s) 178, 194
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 61, 79
BspACI CCGC 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 180, 196
BspOI GCTAGC 1 cut(s) 308
BspT107I GGYRCC 2 cut(s) 178, 194
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 2 cut(s) 217, 286
BssECI CCNNGG 2 cut(s) 296, 395
BssT1I CCWWGG 2 cut(s) 296, 395
Bst4CI ACNGT 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 61, 79
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 55, 159
BstV2I GAAGAC 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 4 cut(s) 179, 195, 283, 368
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 168, 258, 264, 308
CviKI_1 RGCY 4 cut(s) 168, 258, 264, 308
CviQI GTAC 4 cut(s) 179, 195, 283, 368
Eco130I CCWWGG 2 cut(s) 296, 395
Eco47I GGWCC 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 296, 395
ErhI CCWWGG 2 cut(s) 296, 395
FaeI CATG 1 cut(s) 111
FaiI YATR 6 cut(s) 109, 119, 189, 205, 261, 379
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 44, 148
Fsp4HI GCNGC 2 cut(s) 44, 148
FspBI CTAG 2 cut(s) 53, 305
GluI GCNGC 2 cut(s) 44, 148
GsuI CTGGAG 1 cut(s) 342
Hin1II CATG 1 cut(s) 111
HinfI GANTC 2 cut(s) 93, 99
Hpy188I TCNGA 3 cut(s) 13, 98, 104
Hpy188III TCNNGA 2 cut(s) 267, 321
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4IV ACGT 2 cut(s) 135, 275
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 135, 275
Hsp92II CATG 1 cut(s) 111
KpnI GGTACC 2 cut(s) 182, 198
LpnPI CCDG 6 cut(s) 185, 198, 228, 252, 299, 306
Lsp1109I GCAGC 2 cut(s) 55, 159
MaeI CTAG 2 cut(s) 53, 305
MaeII ACGT 2 cut(s) 135, 275
MaeIII GTNAC 1 cut(s) 288
MbiI CCGCTC 1 cut(s) 238
MboII GAAGA 2 cut(s) 130, 305
MluCI AATT 2 cut(s) 126, 409
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 5 cut(s) 192, 208, 211, 319, 358
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 158, 412
MwoI GCNNNNNNNGC 1 cut(s) 235
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 180, 196
NmuCI GTSAC 1 cut(s) 288
NspI RCATGY 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 45, 149
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 180, 196
PspPI GGNCC 1 cut(s) 392
RsaI GTAC 4 cut(s) 180, 196, 284, 369
RsaNI GTAC 4 cut(s) 179, 195, 283, 368
SaqAI TTAA 2 cut(s) 158, 412
SatI GCNGC 2 cut(s) 44, 148
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 108
SetI ASST 9 cut(s) 138, 170, 184, 200, 222, 260, 278, 310, 369
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 163, 233
SmoI CTYRAG 2 cut(s) 163, 233
Sse9I AATT 2 cut(s) 126, 409
SsiI CCGC 1 cut(s) 238
SspMI CTAG 2 cut(s) 53, 305
StyI CCWWGG 2 cut(s) 296, 395
TaaI ACNGT 1 cut(s) 372
TaiI ACGT 2 cut(s) 138, 278
TasI AATT 2 cut(s) 126, 409
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 158, 412
Tru9I TTAA 2 cut(s) 158, 412
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 2 cut(s) 43, 147
Tsp45I GTSAC 1 cut(s) 288
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 2 cut(s) 53, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.