RchiOBHm_Chr7g0213921

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0025144
Physical Location & Seq
Forward (+)
31026942 .. 31030652
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGACTCACCTTCCTTCAGGGACACAGTGGCTTCACAGTAGGGTTGATATTAATGGTTATGAAGAATATAGTGGTACCGAGTACCGCTCTGCTGGATGTTCCGAGGAATACAATGTTATTGAACGAAATCTCGAGCATGCCGGGGGGGAGGAATCTCTCATGTTAGAAGGTGATATAGGGGGTGGATTGGTTCTCCAACGACAGTTATATATTCCAAAGAATGATCCCAAGGTTTTCCGGATCGACTCTAGCATTATAGCACGCAAAGTTGGTGCTGGTTCTGGTGGATATTCAAGACTGGTCTGCTTGAGAGTACACCCAATGTTCACCCTGTTGCACCCCTCAGAATCTCATGTTTCATTTACGGCTGTTGACGGGTCAAAGCATGAAATTGGGCCCGAATCTAACGAGCAGTTCTATGAAGGGAATTTAATGCCTAATGGTGAATGGATGCTCATTGATAAATGCCTTGGCTTGGGGTTATTGAATCGGTTTGATGTCAGTCAGGTTTTCAAGTGCCTAATCCACTGGGGAACTGGTACTGTTAATTTGGAGCTGTGGTCCGAGGAGAGGCCTGTTTCAAACCAATCACCTCTTAGAATATCCCACGAGTATGAGGTGATAGATCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

211

Amino Acids

23.71

Weight (kDa)

5.14

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025144)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213921
rosa_samantha Rh7AG277700 Rh7CG296800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 1 cut(s) 85
AclWI GGATC 2 cut(s) 218, 248
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 4 cut(s) 76, 83, 315, 541
AfiI CCNNNNNNNGG 2 cut(s) 475, 570
AgsI TTSAA 5 cut(s) 122, 294, 487, 514, 582
AluBI AGCT 1 cut(s) 556
AluI AGCT 1 cut(s) 556
AlwI GGATC 2 cut(s) 218, 248
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 2 cut(s) 395, 572
ApaI GGGCCC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 427
AseI ATTAAT 1 cut(s) 51
Asp718I GGTACC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 395, 396, 561
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 5 cut(s) 182, 319, 455, 582, 631
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 561
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 608
BceAI ACGGC 1 cut(s) 381
BcnI CCSGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 561
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 395, 396, 561
BmiI GGNNCC 2 cut(s) 76, 397
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 142
BsaJI CCNNGG 5 cut(s) 102, 141, 228, 469, 564
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 570
Bse1I ACTGG 3 cut(s) 303, 533, 541
BseAI TCCGGA 1 cut(s) 237
BseDI CCNNGG 5 cut(s) 102, 141, 228, 469, 564
BseGI GGATG 2 cut(s) 101, 456
BseLI CCNNNNNNNGG 2 cut(s) 475, 570
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 3 cut(s) 303, 533, 541
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 399
BshFI GGCC 2 cut(s) 397, 574
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 141, 238
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 475, 570
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 2 cut(s) 397, 574
BsoBI CYCGRG 1 cut(s) 131
Bsp120I GGGCCC 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 223, 240, 625
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 397, 574
BspCNI CTCAG 1 cut(s) 356
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 76, 397
BspPI GGATC 2 cut(s) 218, 248
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 3 cut(s) 303, 533, 541
BssECI CCNNGG 5 cut(s) 102, 141, 228, 469, 564
BssMI GATC 3 cut(s) 223, 240, 625
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 228, 469
Bst2BI CACGAG 1 cut(s) 608
Bst4CI ACNGT 4 cut(s) 27, 38, 204, 544
BstC8I GCNNGC 2 cut(s) 138, 262
BstDEI CTNAG 2 cut(s) 343, 596
BstF5I GGATG 2 cut(s) 101, 456
BstKTI GATC 3 cut(s) 226, 243, 628
BstMBI GATC 3 cut(s) 223, 240, 625
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 2 cut(s) 397, 574
BtsCI GGATG 2 cut(s) 101, 456
BtsIMutI CAGTG 2 cut(s) 32, 526
Cac8I GCNNGC 2 cut(s) 138, 262
Cfr13I GGNCC 3 cut(s) 395, 396, 561
Csp6I GTAC 4 cut(s) 75, 82, 314, 540
CviAII CATG 4 cut(s) 137, 160, 353, 386
CviJI RGCY 6 cut(s) 31, 368, 397, 474, 556, 574
CviKI_1 RGCY 6 cut(s) 31, 368, 397, 474, 556, 574
CviQI GTAC 4 cut(s) 75, 82, 314, 540
DdeI CTNAG 2 cut(s) 343, 596
DpnI GATC 3 cut(s) 225, 242, 627
DpnII GATC 3 cut(s) 223, 240, 625
Eco130I CCWWGG 2 cut(s) 228, 469
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 228, 469
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 228, 469
FaeI CATG 4 cut(s) 140, 163, 356, 389
FaqI GGGAC 1 cut(s) 34
FatI CATG 4 cut(s) 136, 159, 352, 385
FokI GGATG 2 cut(s) 108, 463
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 397, 574
HapII CCGG 2 cut(s) 141, 238
Hin1II CATG 4 cut(s) 140, 163, 356, 389
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 6 cut(s) 4, 152, 245, 347, 401, 487
HpaII CCGG 2 cut(s) 141, 238
HphI GGTGA 5 cut(s) 182, 319, 455, 582, 631
Hpy166II GTNNAC 3 cut(s) 316, 327, 373
Hpy188I TCNGA 3 cut(s) 103, 346, 565
Hpy188III TCNNGA 3 cut(s) 131, 238, 294
Hpy8I GTNNAC 3 cut(s) 316, 327, 373
HpyAV CCTTC 4 cut(s) 20, 24, 161, 416
HpyCH4III ACNGT 4 cut(s) 27, 38, 204, 544
HpyCH4V TGCA 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 343, 596
Hsp92II CATG 4 cut(s) 140, 163, 356, 389
Kpn2I TCCGGA 1 cut(s) 237
KpnI GGTACC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 223, 240, 625
LmnI GCTCC 1 cut(s) 553
LweI GCATC 1 cut(s) 441
MaeI CTAG 1 cut(s) 249
MalI GATC 3 cut(s) 225, 242, 627
MbiI CCGCTC 1 cut(s) 87
MboI GATC 3 cut(s) 223, 240, 625
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 3 cut(s) 390, 427, 547
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 97, 142, 352, 559, 564, 603, 610
MroI TCCGGA 1 cut(s) 237
MseI TTAA 3 cut(s) 51, 431, 546
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 2 cut(s) 141, 238
MspR9I CCNGG 1 cut(s) 142
NciI CCSGG 1 cut(s) 142
NdeII GATC 3 cut(s) 223, 240, 625
NlaIII CATG 4 cut(s) 140, 163, 356, 389
NlaIV GGNNCC 2 cut(s) 76, 397
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 574
PfeI GAWTC 4 cut(s) 152, 347, 401, 487
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 76, 397
PspOMI GGGCCC 1 cut(s) 395
PspPI GGNCC 3 cut(s) 395, 396, 561
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 4 cut(s) 76, 83, 315, 541
RsaNI GTAC 4 cut(s) 75, 82, 314, 540
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 3 cut(s) 51, 431, 546
Sau3AI GATC 3 cut(s) 223, 240, 625
Sau96I GGNCC 3 cut(s) 395, 396, 561
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 399
SetI ASST 7 cut(s) 12, 172, 234, 510, 558, 595, 621
SfaNI GCATC 1 cut(s) 441
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 561
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 131, 307
SmoI CTYRAG 2 cut(s) 131, 307
SphI GCATGC 1 cut(s) 140
Sse9I AATT 3 cut(s) 390, 427, 547
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 1 cut(s) 85
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 228, 469
TaaI ACNGT 4 cut(s) 27, 38, 204, 544
TaqI TCGA 2 cut(s) 132, 243
TasI AATT 3 cut(s) 390, 427, 547
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 4 cut(s) 152, 347, 401, 487
Tru1I TTAA 3 cut(s) 51, 431, 546
Tru9I TTAA 3 cut(s) 51, 431, 546
TscAI CASTG 2 cut(s) 32, 533
TspDTI ATGAA 4 cut(s) 75, 348, 402, 435
TspRI CASTG 2 cut(s) 32, 533
VpaK11BI GGWCC 1 cut(s) 561
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.