RchiOBHm_Chr7g0213981

Belongs to the helicase family. RecQ subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
31127384 .. 31127831
448 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGGGCTTGGAAGCTTTAGGGATTCCAGCTCATATGTTGACATCAACTACAAGTGCGGAGGAAGAGAAGTTAATATACAAGGCCCTCGAAAAGGGTGAAGGAGATTTGAAAATATTGTATGTGACGCCACAAAAAATATTAAAGAAGATCATCTCCAACCCAAAGGGCTAA

Protein Analysis

56

Amino Acids

6.11

Weight (kDa)

8.01

Isoelectric Point (pI)

16.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 14, 29
AluI AGCT 2 cut(s) 14, 29
AoxI GGCC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BmgT120I GGNCC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 91
BshFI GGCC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 83
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 89
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 133
CviJI RGCY 5 cut(s) 6, 14, 29, 83, 168
CviKI_1 RGCY 5 cut(s) 6, 14, 29, 83, 168
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 82
FaiI YATR 4 cut(s) 33, 35, 76, 120
FauNDI CATATG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 74, 157
MnlI CCTC 2 cut(s) 52, 95
MseI TTAA 2 cut(s) 71, 140
NdeI CATATG 1 cut(s) 33
NdeII GATC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 71, 140
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 82
SetI ASST 2 cut(s) 16, 31
SgeI CNNG 5 cut(s) 19, 38, 63, 91, 98
SsiI CCGC 1 cut(s) 56
SspI AATATT 2 cut(s) 114, 138
TaqI TCGA 1 cut(s) 87
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 71, 140
Tru9I TTAA 2 cut(s) 71, 140
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.