RchiOBHm_Chr7g0214461

WD40 associated region in TFIID subunit, NTD2 domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
31762747 .. 31765735
2989 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 132 bp
ATGTATGTGTGTGAAAACGTTTATGACTATCAAATGATTCACCTACAAGATCGACAAAAGTTGGAAGGAGTTCTTTCTCCTTCACATTTAGAGGACATGGAATTTGCTCAATCTCTAGGCAGAACAGAGTGA

Protein Analysis

43

Amino Acids

5.1

Weight (kDa)

4.65

Isoelectric Point (pI)

68.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 18
AcsI RAATTY 1 cut(s) 101
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 32
BfaI CTAG 1 cut(s) 116
Bsp143I GATC 1 cut(s) 49
BssMI GATC 1 cut(s) 49
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
CviAII CATG 1 cut(s) 97
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 6, 24, 98
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 96
FspBI CTAG 1 cut(s) 116
FspEI CC 7 cut(s) 47, 51, 56, 77, 83, 93, 102
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 59, 90
HpyCH4IV ACGT 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MluCI AATT 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 69
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 18
Sau3AI GATC 1 cut(s) 49
SetI ASST 2 cut(s) 21, 45
SgeI CNNG 3 cut(s) 59, 109, 128
Sse9I AATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 116
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 52
TasI AATT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 37
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.