RchiOBHm_Chr7g0214571

protein ubiquitination

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
31948079 .. 31948312
234 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGATAGGTCTTTTGACCCTTTTTCTGTCTATAGTTGCTATGATGGTCACATTTTCTTGTGCCCTTATCATTATGTTTCATGGGAAATATTCATGGATCGTTCTGATGAGCATTTTTGTTTCAAGTGTGCCAGTGTCCTCATTTGCTTGGATGCAGTTTCCTCTCCTTATCGAGACTTTCAAGTCTACATATGGACCAGGAATATTTGACAAAAAAGTCAAACCTTTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

9.36

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 181, 215
AccI GTMKAC 1 cut(s) 185
AclWI GGATC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 123, 181
AjnI CCWGG 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 64
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 96
BspPI GGATC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 131
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 2 cut(s) 80, 93
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DrdI GACNNNNNNGTC 2 cut(s) 181, 215
DseDI GACNNNNNNGTC 2 cut(s) 181, 215
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 83, 96
FaiI YATR 7 cut(s) 32, 41, 74, 81, 94, 190, 192
FatI CATG 2 cut(s) 79, 92
FauNDI CATATG 1 cut(s) 190
FblI GTMKAC 1 cut(s) 185
FokI GGATG 1 cut(s) 163
Hin1II CATG 2 cut(s) 83, 96
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 154
Hsp92II CATG 2 cut(s) 83, 96
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 144, 183, 210
LweI GCATC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 64
MnlI CCTC 2 cut(s) 148, 171
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 83, 96
NmuCI GTSAC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 64
SetI ASST 2 cut(s) 10, 226
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 194
SspI AATATT 2 cut(s) 89, 204
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 171
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 68, 81
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.