RchiOBHm_Chr7g0214621

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
32003505 .. 32008242
4738 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
ATGCACTTGCACTTGAGTTTCTTTATCATAGAATGTCATTCTCAATTTATGCTCCTGGGTGGTGGCCACAAGTTTACCCATGAAGGTATCAACTTGAGAGGAGATATCAATGTTTGTATAGTAGGGGACCCCAGTTGTGCAAAATCTCAGTTCCTCAAGTATGCTGCTGGAATAGTTCCAAGATCTGTTTACACGTCAGGGAAATCCTCCTCTGCTGCTGGTTTAACTGCAACTGTGGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCTGGCGCGTTAATGCTCGCTGACAATGGCATTTGTTGCTTTGATGAATTTGACAAGATGGACGTTAGGGATCAGGTTGCAATTCATGAGGCAATGGAACAGCAGACAATAAGCATTACAAAAGCAGGAATACAGGCAACACTGAATGCTCGAACATCAATTCTTGCTGCTGCGAACCCCACAGGGGGCCTTTATGATAAATCTAAACCCCTCAAGGTATTTATGTTCATAGCCCACCATATTGTAAGAGTACATTAA

Protein Analysis

176

Amino Acids

19.01

Weight (kDa)

6.48

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCM PF00493 16 - 163 5.7e-70 MCM P-loop domain
Mg_chelatase PF01078 89 - 153 5e-07 Magnesium chelatase, subunit ChlI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AccII CGCG 1 cut(s) 281
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 2 cut(s) 64, 237
AcsI RAATTY 2 cut(s) 260, 320
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 3 cut(s) 254, 457, 458
AflIII ACRYGT 1 cut(s) 192
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 54
AlwI GGATC 1 cut(s) 351
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 3 cut(s) 64, 237, 460
ApeKI GCWGC 4 cut(s) 164, 215, 440, 443
ApoI RAATTY 2 cut(s) 260, 320
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 127, 460
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 2 cut(s) 66, 239
BbvI GCAGC 4 cut(s) 151, 202, 427, 430
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 56
BglII AGATCT 1 cut(s) 182
BisI GCNGC 4 cut(s) 165, 216, 441, 444
BlsI GCNGC 4 cut(s) 166, 217, 442, 445
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 127, 460
BmiI GGNNCC 3 cut(s) 128, 129, 461
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 2 cut(s) 126, 264
BmuI ACTGGG 2 cut(s) 126, 264
BpuEI CTTGAG 4 cut(s) 34, 115, 140, 470
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 457, 458
Bse1I ACTGG 2 cut(s) 132, 259
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 254, 457, 458
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 132, 259
BseRI GAGGAG 2 cut(s) 114, 199
BseXI GCAGC 4 cut(s) 151, 202, 427, 430
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 66, 239, 462
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 3 cut(s) 254, 457, 458
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 66, 239, 462
Bsp143I GATC 2 cut(s) 182, 343
BspANI GGCC 3 cut(s) 66, 239, 462
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 3 cut(s) 128, 129, 461
BspPI GGATC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 2 cut(s) 132, 259
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 182, 343
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 277, 291
BstDEI CTNAG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 185, 346
BstMBI GATC 2 cut(s) 182, 343
BstMWI GCNNNNNNNGC 2 cut(s) 236, 309
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 151, 202, 427, 430
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 3 cut(s) 66, 239, 462
BtrI CACGTC 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 277, 291
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 127, 460
Csp6I GTAC 1 cut(s) 524
CviAII CATG 2 cut(s) 80, 359
CviJI RGCY 5 cut(s) 66, 239, 275, 462, 506
CviKI_1 RGCY 5 cut(s) 66, 239, 275, 462, 506
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 184, 345
DpnII GATC 2 cut(s) 182, 343
EaeI YGGCCR 2 cut(s) 64, 237
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 127
EcoO109I RGGNCCY 2 cut(s) 127, 460
EcoRII CCWGG 1 cut(s) 54
EcoRV GATATC 1 cut(s) 106
FaeI CATG 2 cut(s) 83, 362
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 79, 358
Fnu4HI GCNGC 4 cut(s) 165, 216, 441, 444
Fsp4HI GCNGC 4 cut(s) 165, 216, 441, 444
GlaI GCGC 1 cut(s) 280
GluI GCNGC 4 cut(s) 165, 216, 441, 444
HaeIII GGCC 3 cut(s) 66, 239, 462
HhaI GCGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 83, 362
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
Hpy166II GTNNAC 2 cut(s) 75, 190
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 75, 190
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 194, 336
HpyCH4V TGCA 5 cut(s) 4, 10, 140, 230, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 309
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 2 cut(s) 194, 336
Hsp92II CATG 2 cut(s) 83, 362
HspAI GCGC 1 cut(s) 279
KflI GGGWCCC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 182, 343
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 4 cut(s) 151, 202, 427, 430
MaeII ACGT 2 cut(s) 194, 336
MalI GATC 2 cut(s) 184, 345
MboI GATC 2 cut(s) 182, 343
MflI RGATCY 1 cut(s) 182
MlsI TGGCCA 2 cut(s) 66, 239
MluCI AATT 5 cut(s) 44, 260, 320, 354, 432
MluNI TGGCCA 2 cut(s) 66, 239
MnlI CCTC 7 cut(s) 92, 164, 217, 220, 265, 355, 494
Mox20I TGGCCA 2 cut(s) 66, 239
MscI TGGCCA 2 cut(s) 66, 239
MseI TTAA 3 cut(s) 224, 284, 529
Msp20I TGGCCA 2 cut(s) 66, 239
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 236, 309
NdeII GATC 2 cut(s) 182, 343
NlaIII CATG 2 cut(s) 83, 362
NlaIV GGNNCC 3 cut(s) 128, 129, 461
PagI TCATGA 1 cut(s) 358
PctI GAATGC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 4 cut(s) 166, 217, 442, 445
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 128, 129, 461
PspPI GGNCC 2 cut(s) 127, 460
PspPPI RGGWCCY 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 224, 284, 529
SatI GCNGC 4 cut(s) 165, 216, 441, 444
Sau3AI GATC 2 cut(s) 182, 343
Sau96I GGNCC 2 cut(s) 127, 460
ScrFI CCNGG 1 cut(s) 56
SetI ASST 5 cut(s) 88, 197, 339, 351, 492
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 4 cut(s) 13, 94, 155, 485
SmoI CTYRAG 4 cut(s) 13, 94, 155, 485
Sse9I AATT 5 cut(s) 44, 260, 320, 354, 432
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 197, 339
TaqI TCGA 1 cut(s) 424
TasI AATT 5 cut(s) 44, 260, 320, 354, 432
TatI WGTACW 1 cut(s) 523
Tru1I TTAA 3 cut(s) 224, 284, 529
Tru9I TTAA 3 cut(s) 224, 284, 529
TscAI CASTG 1 cut(s) 420
TseI GCWGC 4 cut(s) 164, 215, 440, 443
TspDTI ATGAA 4 cut(s) 96, 333, 347, 490
TspRI CASTG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 260, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.