Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

32581944 .. 32582580

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTGTTTAAGACCAAGCTGAGTAGTGCTCGACTGGTTTACAAGCCAAAAATTCTACTTTCAGATGAAGCCACAAGCGCTCTTGACACAAAATCTGAGAGAATTGTGCAAGAGGCACTAGACAAAGTAATGATCAACCGAACTACTGTCATGGTAACCCACCGCCTGAGCACAGAAAGGAAGGCTGACACCATTGCTGTAATAAATCAAGGAGCAATTGTTGAAAAAGAAAATGTACGAGGACGCAAGCCAAGTAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

87

Amino Acids

9.81

Weight (kDa)

9.99

Isoelectric Point (pI)

6.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	237
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	2 cut(s)	19, 258
AluI	AGCT	2 cut(s)	19, 258
Alw21I	GWGCWC	2 cut(s)	31, 173
Aor51HI	AGCGCT	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	31, 173
BclI	TGATCA	1 cut(s)	132
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu10I	CCTNAGC	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	11, 87, 158
BseNI	ACTGG	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	31, 173
Bsp1286I	GDGCHC	2 cut(s)	31, 173
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	12, 88, 159
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	20, 96, 167
BstEII	GGTNACC	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	248
CfoI	GCGC	1 cut(s)	80
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	19, 46, 71, 185, 250, 258
CviKI_1	RGCY	6 cut(s)	19, 46, 71, 185, 250, 258
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	3 cut(s)	20, 96, 167
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
FaeI	CATG	1 cut(s)	154
FaiI	YATR	1 cut(s)	152
FatI	CATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	132
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	81
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	64, 97
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	20, 96, 167
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	3 cut(s)	20, 179, 244
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	31, 173
MluCI	AATT	3 cut(s)	51, 102, 216
MnlI	CCTC	2 cut(s)	106, 233
MseI	TTAA	1 cut(s)	9
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	154
PspEI	GGTNACC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	31, 173
SetI	ASST	2 cut(s)	21, 260
Sse9I	AATT	3 cut(s)	51, 102, 216
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	51, 102, 216
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	81
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.