Pentatricopeptide repeat-containing protein At1g77360
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 56 | 9.4e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 5 - 36 | 4.9e-13 | PPR repeat |
| PPR_2 | PF13041 | 8 - 54 | 1.1e-09 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 9.2e-07 | PPR repeat |
| PPR_long | PF17177 | 57 - 141 | 9.7e-06 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 63 - 173 | 5.7e-10 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 70 - 123 | 8.6e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 79 - 125 | 3.2e-13 | PPR repeat family |
| PPR_3 | PF13812 | 101 - 161 | 4.4e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 114 - 160 | 1.1e-10 | PPR repeat family |
| PPR_1 | PF12854 | 145 - 176 | 7.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 147 - 194 | 1.4e-11 | PPR repeat family |
| PPR_1 | PF12854 | 185 - 210 | 4.1e-08 | PPR repeat |
| PPR | PF01535 | 185 - 211 | 2.7e-06 | PPR repeat |
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No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 569 |
| Acc36I | ACCTGC | 1 cut(s) | 359 |
| AccI | GTMKAC | 1 cut(s) | 455 |
| AclWI | GGATC | 1 cut(s) | 431 |
| AcoI | YGGCCR | 1 cut(s) | 640 |
| AfaI | GTAC | 1 cut(s) | 521 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 345 |
| AgsI | TTSAA | 7 cut(s) | 185, 197, 289, 345, 509, 532, 600 |
| AluBI | AGCT | 1 cut(s) | 372 |
| AluI | AGCT | 1 cut(s) | 372 |
| AlwI | GGATC | 1 cut(s) | 431 |
| AoxI | GGCC | 1 cut(s) | 640 |
| AspS9I | GGNCC | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 475 |
| AvaII | GGWCC | 1 cut(s) | 348 |
| BccI | CCATC | 3 cut(s) | 205, 493, 651 |
| BclI | TGATCA | 1 cut(s) | 423 |
| BfaI | CTAG | 1 cut(s) | 114 |
| BfuAI | ACCTGC | 1 cut(s) | 359 |
| Bme18I | GGWCC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 1 cut(s) | 348 |
| BmsI | GCATC | 4 cut(s) | 100, 178, 433, 537 |
| BsaAI | YACGTR | 1 cut(s) | 453 |
| BsaJI | CCNNGG | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 345 |
| Bse1I | ACTGG | 1 cut(s) | 621 |
| BseDI | CCNNGG | 1 cut(s) | 382 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BseNI | ACTGG | 1 cut(s) | 621 |
| BshFI | GGCC | 1 cut(s) | 642 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BsmI | GAATGC | 1 cut(s) | 200 |
| BsnI | GGCC | 1 cut(s) | 642 |
| Bsp143I | GATC | 2 cut(s) | 423, 436 |
| Bsp19I | CCATGG | 1 cut(s) | 382 |
| BspANI | GGCC | 1 cut(s) | 642 |
| BspMI | ACCTGC | 1 cut(s) | 359 |
| BspPI | GGATC | 1 cut(s) | 431 |
| BsrI | ACTGG | 1 cut(s) | 621 |
| BssECI | CCNNGG | 1 cut(s) | 382 |
| BssMI | GATC | 2 cut(s) | 423, 436 |
| BssNAI | GTATAC | 1 cut(s) | 456 |
| BssT1I | CCWWGG | 1 cut(s) | 382 |
| Bst1107I | GTATAC | 1 cut(s) | 456 |
| Bst4CI | ACNGT | 3 cut(s) | 146, 537, 590 |
| Bst6I | CTCTTC | 1 cut(s) | 615 |
| BstBAI | YACGTR | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 1 cut(s) | 13 |
| BstDSI | CCRYGG | 1 cut(s) | 382 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstKTI | GATC | 2 cut(s) | 426, 439 |
| BstMBI | GATC | 2 cut(s) | 423, 436 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 239, 602 |
| BstSNI | TACGTA | 1 cut(s) | 453 |
| BstZ17I | GTATAC | 1 cut(s) | 456 |
| BsuRI | GGCC | 1 cut(s) | 642 |
| BtgI | CCRYGG | 1 cut(s) | 382 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BtsIMutI | CAGTG | 1 cut(s) | 151 |
| BveI | ACCTGC | 1 cut(s) | 359 |
| Cac8I | GCNNGC | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 348 |
| Csp6I | GTAC | 1 cut(s) | 520 |
| CviAII | CATG | 4 cut(s) | 46, 106, 383, 523 |
| CviJI | RGCY | 9 cut(s) | 15, 86, 233, 242, 338, 372, 503, 605, 642 |
| CviKI_1 | RGCY | 9 cut(s) | 15, 86, 233, 242, 338, 372, 503, 605, 642 |
| CviQI | GTAC | 1 cut(s) | 520 |
| DpnI | GATC | 2 cut(s) | 425, 438 |
| DpnII | GATC | 2 cut(s) | 423, 436 |
| EaeI | YGGCCR | 1 cut(s) | 640 |
| Eam1104I | CTCTTC | 1 cut(s) | 615 |
| EarI | CTCTTC | 1 cut(s) | 615 |
| Eco105I | TACGTA | 1 cut(s) | 453 |
| Eco130I | CCWWGG | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 348 |
| EcoT14I | CCWWGG | 1 cut(s) | 382 |
| EcoT22I | ATGCAT | 1 cut(s) | 552 |
| ErhI | CCWWGG | 1 cut(s) | 382 |
| FaeI | CATG | 4 cut(s) | 49, 109, 386, 526 |
| FatI | CATG | 4 cut(s) | 45, 105, 382, 522 |
| FauNDI | CATATG | 1 cut(s) | 163 |
| FbaI | TGATCA | 1 cut(s) | 423 |
| FblI | GTMKAC | 1 cut(s) | 455 |
| FokI | GGATG | 1 cut(s) | 122 |
| FspBI | CTAG | 1 cut(s) | 114 |
| HaeIII | GGCC | 1 cut(s) | 642 |
| Hin1II | CATG | 4 cut(s) | 49, 109, 386, 526 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HinfI | GANTC | 2 cut(s) | 225, 636 |
| HpaI | GTTAAC | 1 cut(s) | 280 |
| HphI | GGTGA | 1 cut(s) | 475 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 280, 456 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 289, 440, 544 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 280, 456 |
| HpyAV | CCTTC | 2 cut(s) | 253, 624 |
| HpyCH4III | ACNGT | 3 cut(s) | 146, 537, 590 |
| HpyCH4IV | ACGT | 1 cut(s) | 452 |
| HpyCH4V | TGCA | 5 cut(s) | 63, 157, 354, 446, 550 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 239, 602 |
| HpySE526I | ACGT | 1 cut(s) | 452 |
| Hsp92II | CATG | 4 cut(s) | 49, 109, 386, 526 |
| Ksp22I | TGATCA | 1 cut(s) | 423 |
| KspAI | GTTAAC | 1 cut(s) | 280 |
| Kzo9I | GATC | 2 cut(s) | 423, 436 |
| LpnPI | CCDG | 6 cut(s) | 36, 54, 364, 453, 602, 632 |
| LweI | GCATC | 4 cut(s) | 100, 178, 433, 537 |
| MaeI | CTAG | 1 cut(s) | 114 |
| MaeII | ACGT | 1 cut(s) | 452 |
| MaeIII | GTNAC | 2 cut(s) | 31, 331 |
| MalI | GATC | 2 cut(s) | 425, 438 |
| MboI | GATC | 2 cut(s) | 423, 436 |
| MboII | GAAGA | 2 cut(s) | 197, 632 |
| MluCI | AATT | 1 cut(s) | 340 |
| MnlI | CCTC | 3 cut(s) | 66, 294, 391 |
| Mph1103I | ATGCAT | 1 cut(s) | 552 |
| MseI | TTAA | 3 cut(s) | 279, 308, 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| Mva1269I | GAATGC | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 239, 602 |
| NcoI | CCATGG | 1 cut(s) | 382 |
| NdeI | CATATG | 1 cut(s) | 163 |
| NdeII | GATC | 2 cut(s) | 423, 436 |
| NlaIII | CATG | 4 cut(s) | 49, 109, 386, 526 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| NsiI | ATGCAT | 1 cut(s) | 552 |
| PctI | GAATGC | 1 cut(s) | 200 |
| PfeI | GAWTC | 2 cut(s) | 225, 636 |
| Ppu21I | YACGTR | 1 cut(s) | 453 |
| PpuMI | RGGWCCY | 1 cut(s) | 348 |
| PsiI | TTATAA | 1 cut(s) | 569 |
| Psp5II | RGGWCCY | 1 cut(s) | 348 |
| PspPI | GGNCC | 1 cut(s) | 348 |
| PspPPI | RGGWCCY | 1 cut(s) | 348 |
| RsaI | GTAC | 1 cut(s) | 521 |
| RsaNI | GTAC | 1 cut(s) | 520 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 3 cut(s) | 279, 308, 365 |
| Sau3AI | GATC | 2 cut(s) | 423, 436 |
| Sau96I | GGNCC | 1 cut(s) | 348 |
| SetI | ASST | 5 cut(s) | 331, 353, 374, 455, 651 |
| SfaNI | GCATC | 4 cut(s) | 100, 178, 433, 537 |
| SinI | GGWCC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| SnaBI | TACGTA | 1 cut(s) | 453 |
| Sse9I | AATT | 1 cut(s) | 340 |
| SspMI | CTAG | 1 cut(s) | 114 |
| StyI | CCWWGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 3 cut(s) | 146, 537, 590 |
| TaiI | ACGT | 1 cut(s) | 455 |
| TasI | AATT | 1 cut(s) | 340 |
| TatI | WGTACW | 1 cut(s) | 519 |
| TfiI | GAWTC | 2 cut(s) | 225, 636 |
| Tru1I | TTAA | 3 cut(s) | 279, 308, 365 |
| Tru9I | TTAA | 3 cut(s) | 279, 308, 365 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 1 cut(s) | 539 |
| TspRI | CASTG | 1 cut(s) | 151 |
| VpaK11BI | GGWCC | 1 cut(s) | 348 |
| XmiI | GTMKAC | 1 cut(s) | 455 |
| XspI | CTAG | 1 cut(s) | 114 |
| Zsp2I | ATGCAT | 1 cut(s) | 552 |