RchiOBHm_Chr7g0216051

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
33723591 .. 33724653
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGTGGGAATCAGAGACTGAGTCAGTTGGAGGCAGAGATTATGGCAATGGAGATTTTAGTTTAACCAAGCAGAGTGTTAAGAATGATGGGTTTGAACTAAAAGGCAATTCATGGTATGTTGCAACTGATATCCCAAGTGACCTGTTGGTTCAAGTTGGAGAAGTCAATTTTCACTTGCATAAGTATCCCTTGCTGTCAAGGAGTGGAAAGATGAACAGAATCATGTATGAATTACGAGACCCGGACTTAAGTAAGATGGTTTTGGATGACCTTCCTGGGGACCTGAGGCCTTTGAGCTAG

Protein Analysis

99

Amino Acids

11.22

Weight (kDa)

4.85

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 277
AflII CTTAAG 1 cut(s) 247
AgsI TTSAA 2 cut(s) 95, 152
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 8, 231
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 284
BccI CCATC 2 cut(s) 80, 250
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 8, 231
BfaI CTAG 1 cut(s) 298
BfrI CTTAAG 1 cut(s) 247
BfuI GTATCC 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 242, 276
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 242, 276
BpuMI CCSGG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 9, 275
BshFI GGCC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 8, 231
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 231
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 10, 276
BspLI GGNNCC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 18, 284
BstF5I GGATG 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 8, 231
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 240, 274
Bsu36I CCTNAGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 2 cut(s) 111, 223
CviJI RGCY 2 cut(s) 289, 297
CviKI_1 RGCY 2 cut(s) 289, 297
DdeI CTNAG 2 cut(s) 18, 284
Eco147I AGGCCT 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 280
Eco81I CCTNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 130
FaeI CATG 2 cut(s) 114, 226
FaiI YATR 6 cut(s) 42, 112, 117, 180, 224, 228
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 110, 222
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 289
HapII CCGG 1 cut(s) 242
Hin1II CATG 2 cut(s) 114, 226
HinfI GANTC 3 cut(s) 8, 20, 219
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 122, 178
HpyF3I CTNAG 2 cut(s) 18, 284
Hsp92II CATG 2 cut(s) 114, 226
LpnPI CCDG 5 cut(s) 155, 255, 261, 288, 296
MaeI CTAG 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 137
MluCI AATT 3 cut(s) 106, 166, 230
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 7, 136
MnlI CCTC 2 cut(s) 23, 279
MseI TTAA 3 cut(s) 62, 78, 248
MspCI CTTAAG 1 cut(s) 247
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 242, 276
MvaI CCWGG 1 cut(s) 276
NciI CCSGG 1 cut(s) 242
NlaIII CATG 2 cut(s) 114, 226
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 289
PfeI GAWTC 2 cut(s) 8, 219
PflFI GACNNNGTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 17
PsyI GACNNNGTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 62, 78, 248
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 242, 276
SetI ASST 4 cut(s) 144, 273, 285, 299
SinI GGWCC 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 106, 166, 230
SseBI AGGCCT 1 cut(s) 289
SspMI CTAG 1 cut(s) 298
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 240, 274
TasI AATT 3 cut(s) 106, 166, 230
TfiI GAWTC 2 cut(s) 8, 219
Tru1I TTAA 3 cut(s) 62, 78, 248
Tru9I TTAA 3 cut(s) 62, 78, 248
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 99, 227, 243
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 280
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.