RchiOBHm_Chr7g0216071

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
33727127 .. 33727818
692 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGCTATATGGTGTGAATGGAACAATTGAAAAATTTAATGATGAGCATCTTCATTCTAGTGTTGTGTTCAGCTTGATTGTCGATTCCATCCGATTGTGCCTATGCTGGATGCAAGTCCCTCATTCTCCCTCTAATCTCGTCACTCATGAATGGAGAATCCCTATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.47

Weight (kDa)

5.99

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 32
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
ApoI RAATTY 1 cut(s) 32
BccI CCATC 1 cut(s) 95
BfaI CTAG 1 cut(s) 57
BmsI GCATC 2 cut(s) 55, 99
BsaBI GATNNNNATC 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 45
BseGI GGATG 2 cut(s) 87, 114
BseJI GATNNNNATC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
BspHI TCATGA 2 cut(s) 145, 167
BstF5I GGATG 2 cut(s) 87, 114
BtsCI GGATG 2 cut(s) 87, 114
CciI TCATGA 2 cut(s) 145, 167
CviAII CATG 2 cut(s) 146, 168
CviJI RGCY 1 cut(s) 72
CviKI_1 RGCY 1 cut(s) 72
FaeI CATG 2 cut(s) 149, 171
FaiI YATR 6 cut(s) 7, 9, 103, 147, 164, 169
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 145, 167
FokI GGATG 2 cut(s) 74, 121
FspBI CTAG 1 cut(s) 57
Hin1II CATG 2 cut(s) 149, 171
HinfI GANTC 2 cut(s) 83, 156
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 146, 168
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 2 cut(s) 149, 171
LpnPI CCDG 1 cut(s) 91
LweI GCATC 2 cut(s) 55, 99
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 41
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 32
MnlI CCTC 2 cut(s) 129, 139
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 57
MunI CAATTG 1 cut(s) 24
NlaIII CATG 2 cut(s) 149, 171
NmuCI GTSAC 1 cut(s) 139
PagI TCATGA 2 cut(s) 145, 167
PfeI GAWTC 2 cut(s) 83, 156
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 36
SetI ASST 1 cut(s) 74
SfaNI GCATC 2 cut(s) 55, 99
SgeI CNNG 6 cut(s) 69, 85, 118, 125, 149, 158
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 2 cut(s) 24, 32
SspMI CTAG 1 cut(s) 57
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 24, 32
TfiI GAWTC 2 cut(s) 83, 156
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 41, 162
XapI RAATTY 1 cut(s) 32
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.