RchiOBHm_Chr7g0216361

Mannosyl-oligosaccharide glucosidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
33929545 .. 33930975
1431 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGGATCTTTACTTTGATTTCGGGAATCATACAGAAAAGGTTCATTTAAGGTGGAAAAAAATAATGGTGGGGAACATTTATCAAGATCTTTCACGGGTAGTATTGGAAACTCCCAAGCTGAGACTGGTTCCTCATATTGGCTATGTTAGTCTTTTCCCCTTCATGGGAAGGATTATTCCAGCTGATTCGTGGATTCTGGAGAAACAGCTAGATCTTATATCAAACCGGACCATCTTGTGGACAAATTTTGGACTGCGTTCTCTTGCAAGAACAAGAAATGTGGTTCGGAATTACCAAAAAACTGGGTTCTTCTGGCAACGGTTTGATCAGAGAAATGGCAAGGGTAAAGGAGCACGCGTATTTACTGGTTGGACTTCTCTTATCTTGTTAATCATGGCAGAAGCTTACCCATAG

Protein Analysis

137

Amino Acids

16.15

Weight (kDa)

10.31

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_63 PF03200 3 - 91 2.5e-25 Glycosyl hydrolase family 63 C-terminal domain
Glyco_hydro_63 PF03200 92 - 134 7.1e-15 Glycosyl hydrolase family 63 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 237
AccII CGCG 1 cut(s) 357
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 244
AfiI CCNNNNNNNGG 4 cut(s) 137, 163, 164, 237
AflIII ACRYGT 1 cut(s) 355
AluBI AGCT 4 cut(s) 118, 182, 208, 404
AluI AGCT 4 cut(s) 118, 182, 208, 404
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 228
AvaII GGWCC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 1 cut(s) 239
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 209
BglII AGATCT 2 cut(s) 85, 211
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 163, 164, 237
Bse1I ACTGG 3 cut(s) 129, 307, 370
BseLI CCNNNNNNNGG 4 cut(s) 137, 163, 164, 237
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 3 cut(s) 129, 307, 370
Bsh1236I CGCG 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 4 cut(s) 137, 163, 164, 237
BsmAI GTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 4 cut(s) 4, 85, 211, 325
BspCNI CTCAG 1 cut(s) 111
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 3 cut(s) 129, 307, 370
BssMI GATC 4 cut(s) 4, 85, 211, 325
Bst4CI ACNGT 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 4 cut(s) 7, 88, 214, 328
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 4 cut(s) 4, 85, 211, 325
BstUI CGCG 1 cut(s) 357
BstX2I RGATCY 3 cut(s) 4, 85, 211
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 3 cut(s) 4, 85, 211
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 2 cut(s) 163, 394
CviJI RGCY 5 cut(s) 118, 141, 182, 208, 404
CviKI_1 RGCY 5 cut(s) 118, 141, 182, 208, 404
DdeI CTNAG 1 cut(s) 119
DpnI GATC 4 cut(s) 6, 87, 213, 327
DpnII GATC 4 cut(s) 4, 85, 211, 325
Eco47I GGWCC 1 cut(s) 228
FaeI CATG 2 cut(s) 166, 397
FaiI YATR 7 cut(s) 30, 135, 144, 164, 218, 395, 412
FatI CATG 2 cut(s) 162, 393
FbaI TGATCA 1 cut(s) 325
FspBI CTAG 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 1 cut(s) 226
Hin1II CATG 2 cut(s) 166, 397
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 25, 185, 193
HpaII CCGG 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 288, 330
Hpy188III TCNNGA 3 cut(s) 22, 83, 197
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 162, 169
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 2 cut(s) 166, 397
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 4, 85, 211, 325
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 7 cut(s) 110, 182, 192, 239, 288, 298, 351
MaeI CTAG 1 cut(s) 209
MalI GATC 4 cut(s) 6, 87, 213, 327
MboI GATC 4 cut(s) 4, 85, 211, 325
MboII GAAGA 1 cut(s) 301
MflI RGATCY 3 cut(s) 4, 85, 211
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 2 cut(s) 244, 289
MluI ACGCGT 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 2 cut(s) 47, 389
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 357
NdeII GATC 4 cut(s) 4, 85, 211, 325
NlaIII CATG 2 cut(s) 166, 397
NlaIV GGNNCC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 25, 185, 193
PflMI CCANNNNNTGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 3 cut(s) 4, 85, 211
PvuII CAGCTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 47, 389
Sau3AI GATC 4 cut(s) 4, 85, 211, 325
Sau96I GGNCC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 355
SetI ASST 6 cut(s) 42, 53, 120, 184, 210, 406
SinI GGWCC 1 cut(s) 228
Sse9I AATT 2 cut(s) 244, 289
SspMI CTAG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 321
TasI AATT 2 cut(s) 244, 289
TfiI GAWTC 3 cut(s) 25, 185, 193
Tru1I TTAA 2 cut(s) 47, 389
Tru9I TTAA 2 cut(s) 47, 389
TspDTI ATGAA 2 cut(s) 32, 151
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 186
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.