RchiOBHm_Chr7g0216541

UPF0136 membrane protein At2g26240-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
34131954 .. 34134494
2541 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 180 bp
ATGCACGATTTCTGCTTCACGATCCTCTACAGGCTGTTGCTGGTGGGTGGAGGAATATTTGGGTATTTCAGAAAGTGGAACACAACTTCTCTATTTGAAGGTCCAGTCATTGGATTGGTTCTCACTGTTGCTAGCAATCTCATTCTCCAAGCCTTTCATAAGACCTGCTCTGATTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.61

Weight (kDa)

7.84

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 6 - 50 5.5e-08 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 110
AclWI GGATC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 98
AlwI GGATC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 101
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmtI GCTAGC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 104
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 101
CviJI RGCY 2 cut(s) 34, 152
CviKI_1 RGCY 2 cut(s) 34, 152
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 101
FaiI YATR 1 cut(s) 159
FspBI CTAG 1 cut(s) 132
HinfI GANTC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 71, 172
Hpy188III TCNNGA 2 cut(s) 19, 177
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 4
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 16, 26, 117
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MnlI CCTC 2 cut(s) 35, 44
NdeII GATC 1 cut(s) 21
NheI GCTAGC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 101
SetI ASST 2 cut(s) 103, 167
SfcI CTRYAG 1 cut(s) 28
SgeI CNNG 7 cut(s) 17, 31, 43, 53, 116, 144, 161
SinI GGWCC 1 cut(s) 101
SspI AATATT 1 cut(s) 57
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 127
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 101
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.