RchiOBHm_Chr7g0216551

Ribosome biogenesis protein NSA2 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
34167654 .. 34170536
2883 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGCGATATGGGTATAGACTTGATCACTTTGAGCGCAAGTGCAAGAAGGAGGCTTGTGAGGCTCTGGGTATCAAGGGCAAGATGTTTGCCAAGAAACTCTATGCAGAAAAGGCTCTAATGAAGAAAACATGGTTCTGCTATGTGGGTTCTCTTAAATATTTTGCTCATAATGCAGAAGTTTTCTATTATCAATTGGCTATGCATGAGGAGTCATCGACTAGGCACAAGGTTGATGATGATGATGTCCATGAAGGAGCTGTTCCAACATTGATGTTGGACCGTGACAATACAACACGAGCAAAGGTGAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGACTAAGCAATGGAAGCGGATGATCACAAAAGCCACATTTGTGAATGTAAGTGAGCTTGGTTTAGTCACACCTAACGGGAAAGTAGTGTGGGGGAAATATGCTCAGGGGACAAATAATCCAGAGAACAATGGATGTGTAAATGTAGTTCTACTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.85

Weight (kDa)

9.5

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 88 - 171 3.7e-07 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 339
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 2 cut(s) 257, 415
AluI AGCT 2 cut(s) 257, 415
AoxI GGCC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 294
BclI TGATCA 2 cut(s) 22, 381
BfaI CTAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 374
BseGI GGATG 2 cut(s) 384, 497
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 221
BshFI GGCC 1 cut(s) 310
BslFI GGGAC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 22, 381
BspACI CCGC 1 cut(s) 376
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 374
BssMI GATC 2 cut(s) 22, 381
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 341, 363, 462
BstF5I GGATG 2 cut(s) 384, 497
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 25, 384
BstMBI GATC 2 cut(s) 22, 381
BstMWI GCNNNNNNNGC 4 cut(s) 59, 110, 170, 373
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 384, 497
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 3 cut(s) 129, 203, 248
CviJI RGCY 9 cut(s) 53, 62, 113, 197, 257, 310, 317, 392, 415
CviKI_1 RGCY 9 cut(s) 53, 62, 113, 197, 257, 310, 317, 392, 415
DdeI CTNAG 3 cut(s) 341, 363, 462
DpnI GATC 2 cut(s) 24, 383
DpnII GATC 2 cut(s) 22, 381
DraI TTTAAA 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 204
FaeI CATG 3 cut(s) 132, 206, 251
FaqI GGGAC 1 cut(s) 481
FatI CATG 3 cut(s) 128, 202, 247
FbaI TGATCA 2 cut(s) 22, 381
FokI GGATG 2 cut(s) 391, 504
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 310
HhaI GCGC 1 cut(s) 36
Hin1II CATG 3 cut(s) 132, 206, 251
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 1 cut(s) 209
HphI GGTGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 479
HpyAV CCTTC 2 cut(s) 40, 245
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 42, 104, 173, 202
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 110, 170, 373
HpyF3I CTNAG 3 cut(s) 341, 363, 462
Hsp92II CATG 3 cut(s) 132, 206, 251
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 2 cut(s) 22, 381
Kzo9I GATC 2 cut(s) 22, 381
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 4 cut(s) 50, 324, 449, 492
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 281, 424
MalI GATC 2 cut(s) 24, 383
MboI GATC 2 cut(s) 22, 381
MboII GAAGA 2 cut(s) 133, 332
MfeI CAATTG 1 cut(s) 191
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 255, 287
MnlI CCTC 4 cut(s) 43, 52, 199, 300
Mph1103I ATGCAT 1 cut(s) 204
MseI TTAA 2 cut(s) 153, 333
MslI CAYNNNNRTG 1 cut(s) 398
MunI CAATTG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 59, 110, 170, 373
NdeII GATC 2 cut(s) 22, 381
NlaIII CATG 3 cut(s) 132, 206, 251
NmuCI GTSAC 2 cut(s) 281, 424
NsiI ATGCAT 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 398
PceI AGGCCT 1 cut(s) 310
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 277
PsrI GAACNNNNNNTAC 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 153, 333
Sau3AI GATC 2 cut(s) 22, 381
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 218
SetI ASST 5 cut(s) 231, 259, 306, 417, 433
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 376
SspI AATATT 1 cut(s) 158
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 310
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 191
Tru1I TTAA 2 cut(s) 153, 333
Tru9I TTAA 2 cut(s) 153, 333
TseFI GTSAC 2 cut(s) 281, 424
Tsp45I GTSAC 2 cut(s) 281, 424
TspDTI ATGAA 2 cut(s) 134, 264
VpaK11BI GGWCC 1 cut(s) 277
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.