RchiOBHm_Chr7g0216671

Short-chain dehydrogenase reductase family 42E member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
34291374 .. 34292134
761 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGGACTTTTTCATATCATTCCTGGAAAACATAAAGAGAGACACCTCATTGCTGTTGGCCAGCCTTATTTCGTATCAGAAGGAAGGATTATTTCGGCAGTCTGCACAATCTTATATCCATGGTTGAACCAATGGTGGATTCATCAACCATTGCTCCTTCCTGCTGAAGTATACAAGGTTTATCTATCCCCCCTTCATTTTTTTAAAGCTAAGGAGCAGTTTTGCTATGTCCCAGTAGTGTCTCCTCAAGAGGGCATGGCTACTACAATCTCATACTGGCAGGAGAGGAAAGGACTCTGGATGAATGGACCTGTACCATTCTTCAGAGCTATTATCCTCTTCCTTTTCCGTTCACTGCCGATAGTGAAGGTGGTTTTCCTTGTAGCTGCTGCAGCTCATGTTTTAGAGGCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD DUF4499

Protein Analysis

138

Amino Acids

15.91

Weight (kDa)

9.39

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 186, 307
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 4 cut(s) 209, 329, 386, 395
AluI AGCT 4 cut(s) 209, 329, 386, 395
Alw26I GTCTC 2 cut(s) 34, 246
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 386, 389, 392
AspS9I GGNCC 1 cut(s) 308
AvaII GGWCC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 60
BbvI GCAGC 3 cut(s) 373, 376, 404
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 2 cut(s) 34, 246
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 387, 390, 393
BlsI GCNGC 3 cut(s) 388, 391, 394
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 233, 281
Bse3DI GCAATG 2 cut(s) 48, 149
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 2 cut(s) 48, 149
BseNI ACTGG 2 cut(s) 233, 281
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 3 cut(s) 373, 376, 404
BsgI GTGCAG 1 cut(s) 88
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 2 cut(s) 18, 215
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 34, 246
BsmFI GGGAC 2 cut(s) 18, 215
BsnI GGCC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 119
BspANI GGCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 48, 149
BsrI ACTGG 2 cut(s) 233, 281
BssECI CCNNGG 1 cut(s) 119
BssNAI GTATAC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 119
Bst1107I GTATAC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 34, 246
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 373, 376, 404
BstZ17I GTATAC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 314
CviAII CATG 3 cut(s) 120, 256, 398
CviJI RGCY 8 cut(s) 60, 64, 209, 260, 329, 386, 395, 410
CviKI_1 RGCY 8 cut(s) 60, 64, 209, 260, 329, 386, 395, 410
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 210
DraI TTTAAA 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 186, 307
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 3 cut(s) 123, 259, 401
FaiI YATR 9 cut(s) 15, 33, 115, 121, 172, 228, 257, 274, 399
FaqI GGGAC 2 cut(s) 18, 215
FatI CATG 3 cut(s) 119, 255, 397
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 387, 390, 393
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 3 cut(s) 387, 390, 393
GluI GCNGC 3 cut(s) 387, 390, 393
HaeIII GGCC 1 cut(s) 60
Hin1II CATG 3 cut(s) 123, 259, 401
HinfI GANTC 2 cut(s) 139, 294
Hpy166II GTNNAC 2 cut(s) 172, 353
Hpy188I TCNGA 2 cut(s) 79, 326
Hpy188III TCNNGA 2 cut(s) 248, 298
Hpy8I GTNNAC 2 cut(s) 172, 353
HpyAV CCTTC 5 cut(s) 74, 78, 167, 203, 361
HpyCH4V TGCA 2 cut(s) 105, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 3 cut(s) 123, 259, 401
LmnI GCTCC 2 cut(s) 159, 214
LpnPI CCDG 9 cut(s) 9, 36, 74, 174, 246, 262, 266, 283, 324
Lsp1109I GCAGC 3 cut(s) 373, 376, 404
MboII GAAGA 2 cut(s) 313, 331
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 6 cut(s) 56, 244, 255, 279, 347, 400
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 204, 415
Msp20I TGGCCA 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 1 cut(s) 119
NlaIII CATG 3 cut(s) 123, 259, 401
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 3 cut(s) 388, 391, 394
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 394
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 204, 415
SatI GCNGC 3 cut(s) 387, 390, 393
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 24
SetI ASST 8 cut(s) 48, 180, 211, 313, 331, 372, 388, 397
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 119
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 204, 415
Tru9I TTAA 2 cut(s) 204, 415
TscAI CASTG 1 cut(s) 360
TseI GCWGC 3 cut(s) 386, 389, 392
TspDTI ATGAA 3 cut(s) 131, 185, 317
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.