RchiOBHm_Chr7g0217561

Belongs to the adaptor complexes small subunit family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
35497540 .. 35499835
2296 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGATTCATTTTGTCATTCTTGTTAGCCGACAAGGAAAGGTGAGGCTGACTAAATGGTTTTCAACCTATTCCCAGAAAGAAAGATCCAAGGTTTGTGAGCTGGATTTGATTTTTAACTTCCATAAGGCTTACTATATACTAGATGAACTTCTACTTGCTGGTGAGCTGCAAGAGTCAAGTAAGAGAGCAATAGGACGAATGATAGCTATACATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCAATAAGCAATTTACTCGCACAAGTTAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.88

Weight (kDa)

8.82

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 30 9.3e-06 Clathrin adaptor complex small chain
Clat_adaptor_s PF01217 30 - 73 1.6e-10 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 63, 252
AluBI AGCT 3 cut(s) 100, 166, 206
AluI AGCT 3 cut(s) 100, 166, 206
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 166, 230
AsuHPI GGTGA 2 cut(s) 52, 173
BbvI GCAGC 2 cut(s) 153, 217
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BfaI CTAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 167, 231
BlsI GCNGC 2 cut(s) 168, 232
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 153, 217
BshFI GGCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 217
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 83, 214
BspANI GGCC 1 cut(s) 245
BspDI ATCGAT 1 cut(s) 217
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 83, 214
BssT1I CCWWGG 1 cut(s) 87
BstKTI GATC 2 cut(s) 86, 217
BstMBI GATC 2 cut(s) 83, 214
BstV1I GCAGC 2 cut(s) 153, 217
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 217
BsuRI GGCC 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 217
CviAII CATG 1 cut(s) 212
CviJI RGCY 8 cut(s) 27, 46, 100, 128, 166, 206, 230, 245
CviKI_1 RGCY 8 cut(s) 27, 46, 100, 128, 166, 206, 230, 245
DpnI GATC 2 cut(s) 85, 216
DpnII GATC 2 cut(s) 83, 214
Eco130I CCWWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 215
FaiI YATR 6 cut(s) 123, 135, 137, 209, 213, 281
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 167, 231
Fsp4HI GCNGC 2 cut(s) 167, 231
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 167, 231
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 1 cut(s) 215
HinfI GANTC 2 cut(s) 4, 173
HphI GGTGA 2 cut(s) 52, 173
HpyCH4V TGCA 1 cut(s) 169
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 2 cut(s) 83, 214
LpnPI CCDG 4 cut(s) 86, 86, 144, 259
Lsp1109I GCAGC 2 cut(s) 153, 217
MaeI CTAG 1 cut(s) 140
MalI GATC 2 cut(s) 85, 216
MboI GATC 2 cut(s) 83, 214
MflI RGATCY 1 cut(s) 83
MluCI AATT 1 cut(s) 259
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 4 cut(s) 36, 220, 232, 235
MseI TTAA 2 cut(s) 114, 276
NdeII GATC 2 cut(s) 83, 214
NlaIII CATG 1 cut(s) 215
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 168, 232
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 83
SaqAI TTAA 2 cut(s) 114, 276
SatI GCNGC 2 cut(s) 167, 231
Sau3AI GATC 2 cut(s) 83, 214
SchI GAGTC 1 cut(s) 182
SetI ASST 6 cut(s) 42, 68, 93, 102, 168, 208
Sse9I AATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 259
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 114, 276
Tru9I TTAA 2 cut(s) 114, 276
TseI GCWGC 2 cut(s) 166, 230
TspDTI ATGAA 1 cut(s) 159
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.